Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G071700.1 | Wheat | nucleus | 54.55 | 59.3 |
| AT1G60830.2 | Thale cress | nucleus | 26.2 | 44.14 |
| CDY55407 | Canola | nucleus | 24.06 | 40.18 |
| CDY40492 | Canola | nucleus | 22.46 | 28.0 |
| Bra040973.1-P | Field mustard | nucleus | 26.2 | 18.01 |
| PGSC0003DMT400040069 | Potato | cytosol | 27.27 | 16.4 |
| CDX75589 | Canola | mitochondrion | 28.34 | 14.93 |
| GSMUA_Achr4P16510_001 | Banana | nucleus | 31.02 | 12.29 |
| Bra027119.1-P | Field mustard | nucleus | 28.88 | 11.0 |
| CDY67096 | Canola | mitochondrion | 14.44 | 10.93 |
| TraesCS4D01G143400.3 | Wheat | nucleus | 31.55 | 10.75 |
| Os11t0636900-02 | Rice | nucleus | 32.62 | 10.63 |
| Bra040940.1-P | Field mustard | nucleus | 31.02 | 10.32 |
| TraesCS4D01G150000.4 | Wheat | nucleus | 31.55 | 10.3 |
| CDY40481 | Canola | nucleus | 28.34 | 10.27 |
| CDY66742 | Canola | nucleus | 31.02 | 10.23 |
| Zm00001d048777_P007 | Maize | nucleus | 32.62 | 10.2 |
| CDY35472 | Canola | nucleus | 29.95 | 10.18 |
| CDY24773 | Canola | nucleus | 29.95 | 10.11 |
| Bra010569.1-P | Field mustard | nucleus | 29.95 | 10.11 |
| CDY12869 | Canola | nucleus | 26.74 | 10.08 |
| KXG28995 | Sorghum | nucleus | 32.09 | 10.0 |
| GSMUA_Achr4P11020_001 | Banana | nucleus | 30.48 | 9.9 |
| PGSC0003DMT400033041 | Potato | nucleus | 29.41 | 9.89 |
| CDY30313 | Canola | nucleus | 31.02 | 9.86 |
| Solyc02g085570.2.1 | Tomato | nucleus | 29.41 | 9.86 |
| AT4G36690.1 | Thale cress | nucleus | 29.95 | 9.77 |
| Zm00001d007632_P003 | Maize | nucleus | 32.62 | 9.7 |
| TraesCS5D01G375600.1 | Wheat | nucleus | 31.55 | 9.66 |
| AT1G60900.1 | Thale cress | nucleus | 29.95 | 9.51 |
| VIT_04s0023g01450.t01 | Wine grape | nucleus | 28.34 | 9.38 |
| Solyc02g062920.2.1 | Tomato | nucleus | 27.81 | 9.29 |
| Bra031477.1-P | Field mustard | nucleus | 29.41 | 9.26 |
| CDY46188 | Canola | nucleus | 29.41 | 9.26 |
| PGSC0003DMT400000919 | Potato | nucleus | 29.95 | 9.26 |
| CDY03767 | Canola | nucleus | 29.41 | 9.06 |
| Solyc12g008750.1.1 | Tomato | nucleus | 28.88 | 8.9 |
| KRH56450 | Soybean | nucleus | 28.34 | 8.76 |
| KRH64800 | Soybean | nucleus | 27.81 | 8.67 |
| VIT_13s0139g00410.t01 | Wine grape | cytosol | 2.67 | 7.35 |
| Bra031341.1-P | Field mustard | nucleus | 6.95 | 5.18 |
| CDY55589 | Canola | mitochondrion | 6.95 | 5.18 |
| Bra010656.1-P | Field mustard | mitochondrion, plastid | 5.88 | 4.35 |
| VIT_13s0139g00390.t01 | Wine grape | plasma membrane | 2.67 | 3.21 |
| CDY12868 | Canola | mitochondrion | 3.74 | 3.07 |
| CDY40493 | Canola | nucleus | 3.74 | 2.49 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G071600.1 | EnsemblPlantsGene:TraesCS5D01G071600 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | PANTHER:PTHR23139 | PANTHER:PTHR23139:SF80 | SEG:seg |
| SUPFAM:SSF54928 | TIGR:cd12232 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr5D:-:69504226..69505012
Molecular Weight (calculated)
20765.2 Da
IEP (calculated)
5.970
GRAVY (calculated)
-0.699
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MANSSPPADG HSHQHEWTPV VLECKHIRKP DGTPLQLHLH CRPNRPRTNA HQQHPTNTTT TTTDRSRVPP EAGATKVVRL TKMLSPDDCL EDDEFEDLVE
101: DVTEEARTFG NLVKVVIPRP SPGSNPAVAG VGKAFLEYAC LDSSSHCRRS MDRMWFAGRR IAAGFYPEDM FAAGDYGYDV HCPEDDG
101: DVTEEARTFG NLVKVVIPRP SPGSNPAVAG VGKAFLEYAC LDSSSHCRRS MDRMWFAGRR IAAGFYPEDM FAAGDYGYDV HCPEDDG
001: MLQPGGTPTK IVCLTQVVTA DDLRDDAEYA DIMEDMSQEG GKFGNLVNVV IPRPNPDHDP TPGVGKVFLE YADVDGSSKA RSGMNGRKFG GNQVVAVYYP
101: EDKYAQGDYE D
101: EDKYAQGDYE D
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9C6C1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.