Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G145600.4 | Wheat | nucleus | 93.54 | 94.2 |
| TraesCS4A01G165000.4 | Wheat | nucleus | 94.07 | 92.14 |
| PGSC0003DMT400040069 | Potato | cytosol | 43.63 | 80.39 |
| HORVU4Hr1G038850.14 | Barley | nucleus | 83.94 | 79.5 |
| CDY67096 | Canola | mitochondrion | 33.86 | 78.54 |
| CDY12868 | Canola | mitochondrion | 31.24 | 78.51 |
| Bra040973.1-P | Field mustard | nucleus | 34.9 | 73.53 |
| CDX75589 | Canola | mitochondrion | 45.38 | 73.24 |
| GSMUA_Achr4P16510_001 | Banana | nucleus | 60.03 | 72.88 |
| TraesCS4D01G143400.3 | Wheat | nucleus | 68.59 | 71.58 |
| AT1G60830.2 | Thale cress | nucleus | 13.79 | 71.17 |
| Zm00001d048777_P007 | Maize | nucleus | 73.47 | 70.4 |
| KXG28995 | Sorghum | nucleus | 72.95 | 69.67 |
| CDY55407 | Canola | nucleus | 13.09 | 66.96 |
| CDY40492 | Canola | nucleus | 17.45 | 66.67 |
| GSMUA_Achr4P11020_001 | Banana | nucleus | 67.02 | 66.67 |
| Zm00001d007632_P003 | Maize | nucleus | 72.08 | 65.66 |
| VIT_04s0023g01450.t01 | Wine grape | nucleus | 64.22 | 65.13 |
| Solyc02g062920.2.1 | Tomato | nucleus | 62.48 | 63.93 |
| Solyc02g085570.2.1 | Tomato | nucleus | 62.13 | 63.8 |
| CDY40481 | Canola | nucleus | 57.24 | 63.57 |
| CDY12869 | Canola | nucleus | 54.97 | 63.51 |
| PGSC0003DMT400033041 | Potato | nucleus | 61.08 | 62.95 |
| AT1G60900.1 | Thale cress | nucleus | 63.53 | 61.8 |
| Bra027119.1-P | Field mustard | nucleus | 52.88 | 61.71 |
| KRH64800 | Soybean | nucleus | 64.22 | 61.33 |
| CDY35472 | Canola | nucleus | 58.64 | 61.09 |
| VIT_13s0139g00410.t01 | Wine grape | cytosol | 7.16 | 60.29 |
| CDY24773 | Canola | nucleus | 58.29 | 60.29 |
| Bra010569.1-P | Field mustard | nucleus | 58.29 | 60.29 |
| KRH56450 | Soybean | nucleus | 63.53 | 60.17 |
| AT4G36690.1 | Thale cress | nucleus | 59.51 | 59.51 |
| Bra040940.1-P | Field mustard | nucleus | 58.29 | 59.43 |
| TraesCS5D01G375600.1 | Wheat | nucleus | 63.18 | 59.25 |
| CDY46188 | Canola | nucleus | 61.26 | 59.09 |
| Bra031477.1-P | Field mustard | nucleus | 61.26 | 59.09 |
| CDY66742 | Canola | nucleus | 57.94 | 58.55 |
| CDY03767 | Canola | nucleus | 60.91 | 57.5 |
| CDY30313 | Canola | nucleus | 58.81 | 57.31 |
| Solyc12g008750.1.1 | Tomato | nucleus | 60.03 | 56.67 |
| PGSC0003DMT400000919 | Potato | nucleus | 59.34 | 56.2 |
| CDY40493 | Canola | nucleus | 26.88 | 54.8 |
| CDY55589 | Canola | mitochondrion | 23.21 | 52.99 |
| Bra010656.1-P | Field mustard | mitochondrion, plastid | 23.39 | 52.96 |
| Bra031341.1-P | Field mustard | nucleus | 22.69 | 51.79 |
| TraesCS5D01G071700.1 | Wheat | nucleus | 10.47 | 34.88 |
| VIT_13s0139g00390.t01 | Wine grape | plasma membrane | 9.25 | 33.97 |
| TraesCS5D01G071600.1 | Wheat | nucleus | 10.3 | 31.55 |
Protein Annotations
| MapMan:16.4.1.2.11.2 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006397 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR23139 | PANTHER:PTHR23139:SF80 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | TIGRFAMs:TIGR01642 | EnsemblPlantsGene:TraesCS4D01G150000 | EnsemblPlants:TraesCS4D01G150000.4 | InterPro:U2AF_lg |
| TIGR:cd12230 | TIGR:cd12231 | TIGR:cd12232 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr4D:+:164876062..164883213
Molecular Weight (calculated)
63979.7 Da
IEP (calculated)
8.906
GRAVY (calculated)
-0.977
Length
573 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEYEERYEG NAAAAVTGGS PPTKPSGFSD QPDGRSQQEV QSHEGSSSKS RERDRGREKD KDTERDREHG RDRERGRDKD RERDRGDRDR ERDRHHREHR
101: ERSEKREHRE RSEKREHRGH SDDHDRHRSR DHDIERRDRD RDGHRRHRSR SRSKGRERRS RSRSRSRSKS KRVSGFDQGP SQAIPMVTPG ATPGQLPAVT
201: PLITGMLPNM FNFTAPTQFN PLVMQPQAMT QQATRHARRV YVGGLPPTAN EQTVAIYFNQ VMAAIGGNTA GPGDAVLNVY INHDKKFAFV EMRSVEEASN
301: AMALDGIMFE GAPVKVRRPT DYNPSLAAAL GPSQPNPNLN LGAVGLTPGS AGGLEGPDRI FVGGLPYYFT EAQVRELLES FGPLRGFDLV KDRETGNSKG
401: YAFCVYQDLN VTDIACAALN GIKMGDKTLT VRRANQGTSQ PRPEQETILL HAQQQVQMQK LVLQVGGALP TKVVCLTQVV SADELRDDEE YEDILEDMRE
501: EGRKYGNLVK AVIPRPDPSG AAVPGVGKVF LEYADIDGST KAKVGMHGRK FGGNQVVAVF YPENKFADGD YDD
101: ERSEKREHRE RSEKREHRGH SDDHDRHRSR DHDIERRDRD RDGHRRHRSR SRSKGRERRS RSRSRSRSKS KRVSGFDQGP SQAIPMVTPG ATPGQLPAVT
201: PLITGMLPNM FNFTAPTQFN PLVMQPQAMT QQATRHARRV YVGGLPPTAN EQTVAIYFNQ VMAAIGGNTA GPGDAVLNVY INHDKKFAFV EMRSVEEASN
301: AMALDGIMFE GAPVKVRRPT DYNPSLAAAL GPSQPNPNLN LGAVGLTPGS AGGLEGPDRI FVGGLPYYFT EAQVRELLES FGPLRGFDLV KDRETGNSKG
401: YAFCVYQDLN VTDIACAALN GIKMGDKTLT VRRANQGTSQ PRPEQETILL HAQQQVQMQK LVLQVGGALP TKVVCLTQVV SADELRDDEE YEDILEDMRE
501: EGRKYGNLVK AVIPRPDPSG AAVPGVGKVF LEYADIDGST KAKVGMHGRK FGGNQVVAVF YPENKFADGD YDD
001: MSEFEDHEGN GTVADAIYDE ENGGRDGEIE DQLDSKPKRE SRDHERETSR SKDREREKGR DKDRERDSEV SRRSRDRDGE KSKERSRDKD RDHRERHHRS
101: SRHRDHSRER GERRERGGRD DDDYRRSRDR DHDRRRDDRG GRRSRRSRSR SKDRSERRTR SRSPSKSKQR VSGFDMAPPA SAMLAAGAAV TGQVPPAPPT
201: LPGAGMFPNM FPLPTGQSFG GLSMMPIQAM TQQATRHARR VYVGGLSPTA NEQSVATFFS QVMAAVGGNT AGPGDAVVNV YINHEKKFAF VEMRSVEEAS
301: NAMSLDGIIF EGAPVKVRRP SDYNPSLAAT LGPSQPSPHL NLAAVGLTPG ASGGLEGPDR IFVGGLPYYF TESQVRELLE SFGGLKGFDL VKDRETGNSK
401: GYAFCVYQDL SVTDIACAAL NGIKMGDKTL TVRRANQGTM LQKPEQENVL LHAQQQIAFQ RVMLQPGAVA TTVVCLTQVV TEDELRDDEE YGDIMEDMRQ
501: EGGKFGALTN VVIPRPSPNG EPVAGLGKVF LKYADTDGST RARFGMNGRK FGGNEVVAVY YPEDKFEQGD YGA
101: SRHRDHSRER GERRERGGRD DDDYRRSRDR DHDRRRDDRG GRRSRRSRSR SKDRSERRTR SRSPSKSKQR VSGFDMAPPA SAMLAAGAAV TGQVPPAPPT
201: LPGAGMFPNM FPLPTGQSFG GLSMMPIQAM TQQATRHARR VYVGGLSPTA NEQSVATFFS QVMAAVGGNT AGPGDAVVNV YINHEKKFAF VEMRSVEEAS
301: NAMSLDGIIF EGAPVKVRRP SDYNPSLAAT LGPSQPSPHL NLAAVGLTPG ASGGLEGPDR IFVGGLPYYF TESQVRELLE SFGGLKGFDL VKDRETGNSK
401: GYAFCVYQDL SVTDIACAAL NGIKMGDKTL TVRRANQGTM LQKPEQENVL LHAQQQIAFQ RVMLQPGAVA TTVVCLTQVV TEDELRDDEE YGDIMEDMRQ
501: EGGKFGALTN VVIPRPSPNG EPVAGLGKVF LKYADTDGST RARFGMNGRK FGGNEVVAVY YPEDKFEQGD YGA
Arabidopsis Description
U2AF65AATU2AF65A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.