Factsheet for Bra010656.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
nucleus 2
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031341.1-P	Field mustard	nucleus	83.0	83.67
Bra040973.1-P	Field mustard	nucleus	52.17	48.53
PGSC0003DMT400040069	Potato	cytosol	51.38	41.8
Bra027119.1-P	Field mustard	nucleus	60.08	30.96
HORVU5Hr1G090000.2	Barley	nucleus	47.43	30.23
GSMUA_Achr4P16510_001	Banana	nucleus	52.57	28.18
Bra031477.1-P	Field mustard	nucleus	57.71	24.58
Solyc02g062920.2.1	Tomato	nucleus	54.15	24.46
PGSC0003DMT400033041	Potato	nucleus	53.75	24.46
EES08974	Sorghum	nucleus	52.57	24.4
Solyc02g085570.2.1	Tomato	nucleus	53.75	24.37
AT1G60900.1	Thale cress	nucleus	56.52	24.28
TraesCS4D01G143400.3	Wheat	nucleus	51.38	23.68
HORVU4Hr1G029030.3	Barley	nucleus	51.38	23.64
TraesCS4B01G145600.4	Wheat	nucleus	52.96	23.55
TraesCS4D01G150000.4	Wheat	nucleus	52.96	23.39
Os11t0636900-02	Rice	nucleus	52.96	23.34
TraesCS4A01G165000.4	Wheat	nucleus	52.96	22.91
Bra010569.1-P	Field mustard	nucleus	49.8	22.74
GSMUA_Achr4P11020_001	Banana	nucleus	51.78	22.74
TraesCSU01G068100.3	Wheat	nucleus	51.78	22.59
Solyc12g008750.1.1	Tomato	nucleus	54.15	22.57
TraesCS4A01G171800.3	Wheat	nucleus	51.78	22.55
KRH64800	Soybean	nucleus	53.36	22.5
PGSC0003DMT400000919	Potato	nucleus	53.36	22.31
KXG28995	Sorghum	nucleus	52.57	22.17
HORVU4Hr1G038850.14	Barley	nucleus	52.96	22.15
Bra040940.1-P	Field mustard	nucleus	49.01	22.06
KRH56450	Soybean	nucleus	52.57	21.98
HORVU5Hr1G089980.2	Barley	nucleus, plastid	47.04	20.91
KXG29128	Sorghum	nucleus	50.2	20.06
TraesCS5A01G366000.1	Wheat	nucleus	47.43	19.8
TraesCS5D01G375600.1	Wheat	nucleus	46.64	19.31
TraesCS5B01G368400.1	Wheat	nucleus	46.64	18.73
TraesCS2B01G144600.1	Wheat	nucleus	7.11	11.04
TraesCS2A01G122400.1	Wheat	nucleus	7.11	11.04
TraesCS5A01G040700.1	Wheat	cytosol	6.72	10.24
TraesCS5B01G041900.1	Wheat	nucleus	6.32	9.64
VIT_13s0139g00390.t01	Wine grape	plasma membrane	5.93	9.62
VIT_13s0139g00410.t01	Wine grape	cytosol	1.98	7.35
AT1G60830.2	Thale cress	nucleus	3.16	7.21
TraesCS5D01G071600.1	Wheat	nucleus	4.35	5.88
TraesCS5D01G071700.1	Wheat	nucleus	3.56	5.23
Zm00001d007635_P004	Maize	nucleus	13.04	4.69
TraesCS5B01G067400.1	Wheat	nucleus	3.16	4.28
Bra022941.1-P	Field mustard	nucleus	12.25	2.46

Protein Annotations

EnsemblPlants:Bra010656.1	EnsemblPlants:Bra010656.1-P	EnsemblPlantsGene:Bra010656	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR23139	PANTHER:PTHR23139:SF80	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002546786	UniProt:M4D2F6	MapMan:16.4.1.2.11.2	:

Description

AT1G60900 (E=4e-068) | U2 snRNP auxiliary factor large subunit, putative

Coordinates

chrA08:+:15803662..15806858

Molecular Weight (calculated)

27352.8 Da

IEP (calculated)

8.875

GRAVY (calculated)

-0.217

Length

253 amino acids

Sequence
(BLAST)

001: MGSKWRKAKI ALGVNLCLYV PKTLEEESRT SNNAVSLSPV TVPRPTTPVP SSSGLRLPWS FSKSSAKGVP VKVTRPTDYN PSLAAAIGPS QPNPNLNLAA
101: VGISSGSTGG LEGPDRLFVG GIPYYLTEDQ IRELLESFGP LRDFNLIKDR DTGNSMGYAF CVFQDPSVTD IACAALNGIK MGNKTLTVRR AVQGAIQPKP
201: EQEDILLHAQ QQIALQPLDS LQVMYGNSDD AFCLRNPWQA TSTLKLTVLT RYT

Best Arabidopsis Sequence Match ( AT1G60900.1 )
(BLAST)

001: MMSYEGNGDG VAISTENHNE NYISLESSPF HEDSKSRESH DLKKDSSKIS EKDNENGRDK DGNKDRDREK DRDREKSRDR DREKSRDRDR DRERSKDRQR
101: DRHHRDRHRD RSRERSEKRD DLDDDHHRRS RDRDRRRSRD RDREVRHRRR SRSRSRSRSE RRSRSEHRHK SEHRSRSRSR SRSKSKRRSG FDMAPPDMLA
201: ATAVAAAGQV PSVPTTATIP GMFSNMFPMV PGQQLGALPV LPVQAMTQQA TRHARRVYVG GLPPTANEQS VSTFFSQVMS AIGGNTAGPG DAVVNVYINH
301: EKKFAFVEMR SVEEASNAMA LDGIILEGVP VKVRRPTDYN PSLAATLGPS QPNPNLNLGA VGLSSGSTGG LEGPDRIFVG GLPYYFTEVQ IRELLESFGP
401: LRGFNLVKDR ETGNSKGYAF CVYQDPSVTD IACAALNGIK MGDKTLTVRR AIQGAIQPKP EQEEVLLYAQ QQIALQRLMF QPGGTPTKIV CLTQVVTADD
501: LRDDEEYAEI MEDMRQEGGK FGNLVNVVIP RPNPDHDPTP GVGKVFLEYA DVDGSSKARS GMNGRKFGGN QVVAVYYPED KYAQGDYED

Arabidopsis Description

U2AF65BSplicing factor U2af large subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q8L716]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.