Factsheet for Solyc02g062920.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g060030.2.1
Solyc02g077840.1.1
Solyc02g085420.2.1
Solyc03g006800.1.1
Solyc05g052960.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36690.1	Solyc02g077840.1.1	AT1G28360.1	21798944
AT4G36690.1	Solyc05g052960.2.1	AT2G39760.1	21798944
AT4G36690.1	Solyc02g085420.2.1	AT3G50670.1	21798944
AT4G36690.1	Solyc01g060030.2.1	AT5G49400.1	21798944
AT4G36690.1	Solyc03g006800.1.1	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040069	Potato	cytosol	55.18	99.36
CDY12868	Canola	mitochondrion	33.04	81.14
Solyc02g085570.2.1	Tomato	nucleus	80.18	80.47
CDY67096	Canola	mitochondrion	35.36	80.16
CDX75589	Canola	mitochondrion	47.86	75.49
VIT_04s0023g01450.t01	Wine grape	nucleus	74.82	74.16
Bra040973.1-P	Field mustard	nucleus	35.54	73.16
GSMUA_Achr4P16510_001	Banana	nucleus	60.89	72.25
HORVU5Hr1G090000.2	Barley	nucleus	48.75	68.77
GSMUA_Achr4P11020_001	Banana	nucleus	69.29	67.36
CDY35472	Canola	nucleus	64.82	66.0
CDY12869	Canola	nucleus	58.39	65.93
CDY40481	Canola	nucleus	60.71	65.89
CDY40492	Canola	nucleus	17.5	65.33
KRH64800	Soybean	nucleus	69.82	65.17
CDY24773	Canola	nucleus	64.46	65.16
Bra010569.1-P	Field mustard	nucleus	64.46	65.16
Bra027119.1-P	Field mustard	nucleus	56.61	64.56
Solyc12g008750.1.1	Tomato	nucleus	69.82	64.42
KRH56450	Soybean	nucleus	69.11	63.97
EES08974	Sorghum	nucleus	61.79	63.49
HORVU4Hr1G029030.3	Barley	nucleus	62.32	63.45
AT1G60900.1	Thale cress	nucleus	66.61	63.33
TraesCS4D01G143400.3	Wheat	nucleus	61.96	63.21
AT1G60830.2	Thale cress	nucleus	12.5	63.06
CDY30313	Canola	nucleus	65.89	62.76
TraesCS4B01G145600.4	Wheat	nucleus	63.57	62.57
TraesCS4D01G150000.4	Wheat	nucleus	63.93	62.48
Bra040940.1-P	Field mustard	nucleus	62.68	62.46
CDY66742	Canola	nucleus	62.5	61.73
AT4G36690.1	Thale cress	nucleus	62.86	61.43
TraesCS4A01G165000.4	Wheat	nucleus	63.75	61.03
CDY46188	Canola	nucleus	64.64	60.94
Bra031477.1-P	Field mustard	nucleus	64.64	60.94
CDY55407	Canola	nucleus	12.14	60.71
Os11t0636900-02	Rice	nucleus	61.79	60.28
CDY03767	Canola	nucleus	64.82	59.8
TraesCSU01G068100.3	Wheat	nucleus	61.79	59.66
TraesCS4A01G171800.3	Wheat	nucleus	61.79	59.55
HORVU4Hr1G038850.14	Barley	nucleus	63.21	58.51
CDY40493	Canola	nucleus	29.29	58.36
KXG28995	Sorghum	nucleus	61.43	57.33
CDY55589	Canola	mitochondrion	25.0	55.78
Bra031341.1-P	Field mustard	nucleus	24.46	54.58
Bra010656.1-P	Field mustard	mitochondrion, plastid	24.46	54.15
HORVU5Hr1G089980.2	Barley	nucleus, plastid	54.46	53.6
TraesCS5D01G375600.1	Wheat	nucleus	56.25	51.55
TraesCS5A01G366000.1	Wheat	nucleus	55.71	51.49
TraesCS5B01G368400.1	Wheat	nucleus	53.57	47.62
KXG29128	Sorghum	nucleus	46.07	40.76
TraesCS2A01G122400.1	Wheat	nucleus	11.61	39.88
TraesCS5A01G040700.1	Wheat	cytosol	11.43	38.55
TraesCS2B01G144600.1	Wheat	nucleus	11.07	38.04
TraesCS5B01G041900.1	Wheat	nucleus	11.07	37.35
TraesCS5D01G071700.1	Wheat	nucleus	9.11	29.65
TraesCS5D01G071600.1	Wheat	nucleus	9.29	27.81
TraesCS5B01G067400.1	Wheat	nucleus	8.93	26.74
Zm00001d007635_P004	Maize	nucleus	26.96	21.45
Solyc09g090420.2.1	Tomato	nucleus	17.68	8.96

Protein Annotations

MapMan:16.4.1.2.11.2	Gene3D:3.30.70.330	GO:GO:0000243	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0008187	GO:GO:0008380
GO:GO:0009987	GO:GO:0016607	GO:GO:0030628	GO:GO:0071004	GO:GO:0089701	InterPro:IPR000504
InterPro:IPR012677	UniProt:K4B6I0	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23139
PANTHER:PTHR23139:SF80	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361
SUPFAM:SSF54928	EnsemblPlantsGene:Solyc02g062920.2	EnsemblPlants:Solyc02g062920.2.1	TIGRFAMs:TIGR01642	InterPro:U2AF_lg	UniParc:UPI0002768466
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:34860360..34869761

Molecular Weight (calculated)

62232.5 Da

IEP (calculated)

8.432

GRAVY (calculated)

-0.924

Length

560 amino acids

Sequence
(BLAST)

001: MPDYEANGED IDNSGSSPLP KSRSSHGGTN PDNFTDSKPQ HSSREYEKDK SSSRSREKDR EKGRDRDRDR GRERDKDRDR ERDKDRDRHH RDRHRDRSDR
101: RERERTRDRD DDERHRTRDY DKQRDHDKDR ESRHRHRSRS RGRSEHKSRS RSRSRSKSKR ISGFDMAPPT TAMLPGATAA AGQVPGTSPG IPGMLPNMFP
201: LTSGPFGALP VMPIQAMTQQ ATRHARRVYV GGLPATSNEQ SVATFFSHVM SAIGGNTAGP GDAVVNVYIN YEKKFAFVEM RSVEEASNAM ALDGIIFEGA
301: PCKVRRPSDY NPSLAATLGP SQPNPNLNLA AVGLSPGSAG GLEGPDRIFV GGLPYYFTEA QIRELLESFG ALRGFDLVKD RETGNSKGYA FCVYQDVSVT
401: DIACAALNGI KMGDKTLTVR RANQGTTQPK PEQESVLLHA QQQIALQRLM LQPGALATKV LCLTQVVEVD ELSNDEDYQD ILEDMRTECG KFGPLVNVVI
501: PRPSPDGEHA PGVGKVFLEY GDVESASKAR QSLNGRKFGG NQVIAVFYPE NKFYEGDYDG

Best Arabidopsis Sequence Match ( AT4G36690.4 )
(BLAST)

001: MSEFEDHEGN GTVADAIYDE ENGGRDGEIE DQLDSKPKRE SRDHERETSR SKDREREKGR DKDRERDSEV SRRSRDRDGE KSKERSRDKD RDHRERHHRS
101: SRHRDHSRER GERRERGGGR RSRRSRSRSK DRSERRTRSR SPSKSKQRVS GFDMAPPASA MLAAGAAVTG QVPPAPPTLP GAGMFPNMFP LPTGQSFGGL
201: SMMPIQAMTQ QATRHARRVY VGGLSPTANE QSVATFFSQV MAAVGGNTAG PGDAVVNVYI NHEKKFAFVE MRSVEEASNA MSLDGIIFEG APVKVRRPSD
301: YNPSLAATLG PSQPSPHLNL AAVGLTPGAS GGLEGPDRIF VGGLPYYFTE SQVRELLESF GGLKGFDLVK DRETGNSKGY AFCVYQDLSV TDIACAALNG
401: IKMGDKTLTV RRANQGTMLQ KPEQENVLLH AQQQIAFQRV MLQPGAVATT VVCLTQVVTE DELRDDEEYG DIMEDMRQEG GKFGALTNVV IPRPSPNGEP
501: VAGLGKVFLK YADTDGSTRA RFGMNGRKFG GNEVVAVYYP EDKFEQGDYG A

Arabidopsis Description

U2AF65AATU2AF65A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.