Factsheet for Solyc03g006800.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008230.2.1
Solyc01g106400.2.1
Solyc02g067030.2.1
Solyc02g087300.1.1
Solyc03g006800.1.1
Solyc03g116340.2.1
Solyc04g009180.1.1
Solyc06g061030.2.1
Solyc08g005910.2.1
Solyc08g077230.2.1
Solyc08g078390.2.1
Solyc08g078400.2.1
Solyc10g047930.1.1
Solyc12g006800.1.1
Solyc12g014410.1.1
Solyc12g096260.1.1
Solyc12g098350.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51910.1	Solyc12g006800.1.1	AT2G03500.1	21798944
AT5G51910.1	Solyc02g087300.1.1	AT2G30050.1	21798944
AT5G51910.1	Solyc12g014410.1.1	AT3G20420.1	21798944
AT5G51910.1	Solyc02g067030.2.1	AT3G29160.1	21798944
AT5G51910.1	Solyc03g116340.2.1	AT3G47640.1	21798944
AT5G51910.1	Solyc01g106400.2.1	AT4G04800.1	21798944
AT5G51910.1	Solyc10g047930.1.1	AT4G04800.1	21798944
AT5G51910.1	Solyc12g098350.1.1	AT4G11175.1	21798944
AT5G51910.1	Solyc08g078390.2.1	AT4G16760.1	21798944
AT5G51910.1	Solyc08g078400.2.1	AT4G16760.1	21798944
AT5G51910.1	Solyc06g061030.2.1	AT4G18020.1	21798944
AT5G51910.1	Solyc08g077230.2.1	AT4G18020.1	21798944
AT5G51910.1	Solyc08g005910.2.1	AT5G07840.1	21798944
AT5G51910.1	Solyc12g096260.1.1	AT5G07840.1	21798944
AT5G51910.1	Solyc01g008230.2.1	AT5G08330.1	21798944
AT5G51910.1	Solyc04g009180.1.1	AT5G08330.1	21798944
AT5G51910.1	Solyc03g006800.1.1	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400062327	Potato	nucleus	93.25	83.06
Solyc02g094290.1.1	Tomato	cytosol	19.02	54.87
AT5G51910.1	Thale cress	nucleus	41.41	46.08
CDY27099	Canola	nucleus	38.96	45.52
CDX91612	Canola	nucleus	39.26	44.44
Bra022568.1-P	Field mustard	cytosol	38.96	42.76
KRH35393	Soybean	nucleus	38.04	39.87
KRG91429	Soybean	nucleus	39.26	39.26
Solyc08g080150.1.1	Tomato	nucleus	42.64	37.57
GSMUA_Achr3P12320_001	Banana	cytosol	22.39	36.14
GSMUA_Achr11P...	Banana	nucleus	23.31	33.63
GSMUA_Achr4P27220_001	Banana	nucleus	21.17	31.36
Solyc09g008030.1.1	Tomato	plastid	19.02	30.85
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	29.75	30.5
Solyc01g008230.2.1	Tomato	nucleus	22.39	29.32
GSMUA_Achr5P03320_001	Banana	cytosol	16.87	29.1
TraesCS4A01G355900.1	Wheat	nucleus	25.77	28.38
Zm00001d031725_P001	Maize	nucleus	30.06	28.0
GSMUA_Achr8P00050_001	Banana	cytoskeleton, cytosol, peroxisome	29.45	27.99
OQU80770	Sorghum	nucleus	30.37	27.58
TraesCS5D01G516300.1	Wheat	nucleus	28.22	26.74
TraesCS5B01G516200.1	Wheat	cytosol, nucleus, peroxisome	28.22	26.36
Solyc04g009180.1.1	Tomato	nucleus	21.47	26.32
Os08t0544800-01	Rice	nucleus	30.06	26.27
Solyc02g068200.1.1	Tomato	nucleus	21.47	25.74
Solyc06g065190.1.1	Tomato	nucleus	24.85	24.92
HORVU5Hr1G117990.1	Barley	cytosol, mitochondrion, nucleus	28.22	24.53
Solyc11g020670.1.1	Tomato	nucleus	25.46	22.19
HORVU5Hr1G080210.1	Barley	cytosol	18.4	21.98
EER99208	Sorghum	nucleus	21.78	21.78
Zm00001d006165_P001	Maize	nucleus	21.17	20.91
Solyc03g116320.2.1	Tomato	nucleus	26.07	20.78
TraesCS5D01G316300.1	Wheat	nucleus	21.17	20.66
TraesCS5B01G310000.1	Wheat	cytosol, nucleus, peroxisome	21.47	20.65
TraesCS5A01G309300.1	Wheat	cytosol, nucleus, peroxisome	20.86	20.12
Solyc06g070900.2.1	Tomato	nucleus	25.15	19.71
Os09t0521300-00	Rice	nucleus	22.39	19.16
Solyc01g103780.2.1	Tomato	nucleus	25.77	18.88
Solyc05g007420.1.1	Tomato	nucleus	22.09	18.8

Protein Annotations

MapMan:15.5.19	UniProt:G3BGW1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008361	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0048364	GO:GO:1900056	EMBL:GQ496339	InterPro:IPR017887
PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF15	EnsemblPlantsGene:Solyc03g006800.1	EnsemblPlants:Solyc03g006800.1.1
InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI00022A26B0	SEG:seg	:	:

Description

Transcription factor TCP19 [Source:Projected from Arabidopsis thaliana (AT5G51910) UniProtKB/Swiss-Prot;Acc:Q9LT89]

Coordinates

chr3:+:1316456..1317436

Molecular Weight (calculated)

34793.9 Da

IEP (calculated)

5.499

GRAVY (calculated)

-0.395

Length

326 amino acids

Sequence
(BLAST)

001: MARVENNQNI EQEDDEVNDC KIDPLLGDSH EYTIAAVGNV TDAEGVDPSP AASTDRVLLL KEEPEENDLR VSTSVGMNMQ LQKVEKQPVK RSSKDRHTKV
101: EGRGRRIRMP AACAARIFQL TRELGHKSEG ETIRWLLERA EPAIIAATGT GTVPAIAVSV NGTLKIPTSN NEGESSRKRR KRAANSEFYE ASNFAPVAPI
201: APQGLVPVWP VGSGNGLIPT TAFTGGATFY MLPPGTNTTV AATGAQLWAT PILNVPYAAT GVSAACVSKS DNNGGKLSTV ASAMPPSSSS TQMLRDFSLE
301: IYDKRELQFM VGSGSSEIDQ TSSSKS

Best Arabidopsis Sequence Match ( AT5G51910.2 )
(BLAST)

001: MESNHEGNAI QVIDQVTTMT HLSDPNPKTK PGMMLMKQED GYLQPVKTKP APKRPTSKDR HTKVEGRGRR IRMPAGCAAR VFQLTRELGH KSDGETIRWL
101: LERAEPAIIE ATGTGTVPAI AVSVNGTLKI PTSSPVLNDG GRDGDGDLIK KRRKRNCTSD FVDVNDSCHS SVTSGLAPIT ASNYGVNILN VNTQGFVPFW
201: PMGMGTAFVT GGPDQMGQMW AIPTVATAPF LNVGARPVSS YVSNASDAEA EMETSGGGTT QPLRDFSLEI YDKRELQFLG GSGNSSPSSC HET

Arabidopsis Description

TCP19Transcription factor TCP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT89]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.