Factsheet for Solyc08g078390.2.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, unclear, nucleus

Predictor Summary:

nucleus 1
peroxisome 6

Predictors

GFP

MS/MS

Papers

unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012322	Potato	peroxisome	98.8	98.8
KRH57460	Soybean	nucleus	82.53	82.41
KRH28148	Soybean	peroxisome	82.38	82.13
KRH16000	Soybean	cytosol, peroxisome	57.38	82.11
Solyc08g078400.2.1	Tomato	unclear	79.97	81.82
CDY42938	Canola	peroxisome	81.48	81.48
CDY59471	Canola	peroxisome	81.48	81.48
Bra040093.1-P	Field mustard	peroxisome	81.33	81.33
AT4G16760.1	Thale cress	peroxisome	80.12	80.12
GSMUA_Achr7P07440_001	Banana	peroxisome	79.07	78.83
AT2G35690.1	Thale cress	peroxisome	77.71	77.71
CDX84603	Canola	peroxisome	77.26	77.26
CDX79618	Canola	peroxisome	77.26	77.26
Bra023025.1-P	Field mustard	peroxisome	77.26	77.26
KXG19087	Sorghum	peroxisome	76.96	76.5
KRH04170	Soybean	nucleus	62.2	76.06
Os06t0103500-01	Rice	peroxisome	76.51	75.93
TraesCS7A01G003900.1	Wheat	peroxisome, unclear	76.36	75.9
TraesCS4A01G494700.1	Wheat	golgi, peroxisome	76.2	75.75
Zm00001d045251_P001	Maize	peroxisome	75.9	75.56
TraesCS7D01G004400.1	Wheat	peroxisome	76.05	75.49
KRH77335	Soybean	peroxisome	82.68	75.31
EER87896	Sorghum	peroxisome	75.6	75.26
Zm00001d045606_P002	Maize	peroxisome	75.15	71.7
VIT_00s0389g00020.t01	Wine grape	nucleus, peroxisome	68.07	52.31
HORVU2Hr1G031180.5	Barley	peroxisome	22.44	50.17
Solyc10g008110.2.1	Tomato	nucleus	25.6	24.89
Solyc04g054890.2.1	Tomato	nucleus	25.45	24.56

Protein Annotations

KEGG:00071+1.3.3.6	KEGG:00592+1.3.3.6	Gene3D:1.10.540.10	Gene3D:1.20.140.10	MapMan:11.7.1.8	Gene3D:2.40.110.10
PDB:2FON	MapMan:5.7.3.2.1	EMBL:AY817109	InterPro:Acyl-CoA_Oxase/DH_cen-dom	InterPro:Acyl-CoA_ox_N	InterPro:Acyl-CoA_oxidase
InterPro:Acyl-CoA_oxidase_C	InterPro:AcylCoA_DH/ox_N_sf	InterPro:AcylCoA_DH/oxidase_NM_dom	InterPro:AcylCo_DH-like_C	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003995	GO:GO:0003997	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0006629	GO:GO:0006631	GO:GO:0006635
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016627	GO:GO:0033539
GO:GO:0050660	GO:GO:0055114	GO:GO:0071949	InterPro:IPR037069	PFAM:PF01756	PFAM:PF02770
PFAM:PF14749	PIRSF:PIRSF000168	PANTHER:PTHR10909	PANTHER:PTHR10909:SF369	UniProt:Q5D8D3	SUPFAM:SSF47203
SUPFAM:SSF56645	EnsemblPlantsGene:Solyc08g078390.2	EnsemblPlants:Solyc08g078390.2.1	UniParc:UPI00004E5694	SEG:seg	:

Description

Acyl-coenzyme A oxidase [Source:UniProtKB/TrEMBL;Acc:Q5D8D3]

Coordinates

chr8:+:62204516..62213975

Molecular Weight (calculated)

74250.1 Da

IEP (calculated)

8.184

GRAVY (calculated)

-0.260

Length

664 amino acids

Sequence
(BLAST)

001: MEGVDYLADE RKKAGFDVDE MKIVWAGSRH DFELTDRISK LVASDPGFSK EGRTMLPRKE LFKNTLRKAA YAWKRIIELR LSQEEATMLR RYVDEPAFTD
101: LHWGMFIPAI KGQGTDKQQE KWLPLAYKMQ IIGCYAQTEL GHGSNVQGLE TTATFDPQTD EFVIHSPTLT SSKWWPGGLG KVSTHAVVYA RLITDGKDYG
201: VNGFIVQLRS LEDHKPLPGV TVGDIGMKFG NGAYNSMDNG VLSFDHVRIP RDQMLMRVSQ VTKEGKYVQS DIPRQLLYGT MVYVRQSIVA DASLAMSRAV
301: CIATRYSAVR RQFGSQNGGQ ETQVIDYKTQ QNRLFPLLAS AYAFRFVGEW LKWLYTDVTQ RLAANDFSTL PEAHACTAGL KSLTTSATAD GIEECRKLCG
401: GHGYLCSSGL PELFAVYVPA CTYEGDNVVL QLQVARFLMK TISQLGTGKK PVGTVSYMGR IEHLMQCRSD VKQAEDWLKP SAVLEAFEAR SARMSVACAK
501: NLSKFENQEE GFAELAADLV EAAVAHCQLI VVSKYIEKLQ QNIPGKGVKQ QLEVLCGIYS LFILHKHQGD FLGTGYITSK QGSLANDQLR ALYSQLRPNA
601: VSLVDAFNYT DHYLGSILGR YDGNVYPKLY EAAWKDPLNK SDIADGFHEY IRPLLKQQLR TAKL

Best Arabidopsis Sequence Match ( AT4G16760.1 )
(BLAST)

001: MEGIDHLADE RNKAEFDVED MKIVWAGSRH AFEVSDRIAR LVASDPVFEK SNRARLSRKE LFKSTLRKCA HAFKRIIELR LNEEEAGRLR HFIDQPAYVD
101: LHWGMFVPAI KGQGTEEQQK KWLSLANKMQ IIGCYAQTEL GHGSNVQGLE TTATFDPKTD EFVIHTPTQT ASKWWPGGLG KVSTHAVVYA RLITNGKDYG
201: IHGFIVQLRS LEDHSPLPNI TVGDIGTKMG NGAYNSMDNG FLMFDHVRIP RDQMLMRLSK VTREGEYVPS DVPKQLVYGT MVYVRQTIVA DASNALSRAV
301: CIATRYSAVR RQFGAHNGGI ETQVIDYKTQ QNRLFPLLAS AYAFRFVGEW LKWLYTDVTE RLAASDFATL PEAHACTAGL KSLTTTATAD GIEECRKLCG
401: GHGYLWCSGL PELFAVYVPA CTYEGDNVVL QLQVARFLMK TVAQLGSGKV PVGTTAYMGR AAHLLQCRSG VQKAEDWLNP DVVLEAFEAR ALRMAVTCAK
501: NLSKFENQEQ GFQELLADLV EAAIAHCQLI VVSKFIAKLE QDIGGKGVKK QLNNLCYIYA LYLLHKHLGD FLSTNCITPK QASLANDQLR SLYTQVRPNA
601: VALVDAFNYT DHYLNSVLGR YDGNVYPKLF EEALKDPLND SVVPDGYQEY LRPVLQQQLR TARL

Arabidopsis Description

ACX1Peroxisomal acyl-coenzyme A oxidase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65202]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.