Factsheet for Solyc10g008110.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
peroxisome 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g080930.2.1
Solyc01g094090.2.1
Solyc01g108790.1.1
Solyc01g108800.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06290.1	Solyc01g080930.2.1	AT5G65940.1	21798944
AT1G06290.1	Solyc01g094090.2.1	AT5G65940.1	21798944
AT1G06290.1	Solyc01g108790.1.1	AT5G65940.1	21798944
AT1G06290.1	Solyc01g108800.2.1	AT5G65940.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027351	Potato	cytosol, extracellular	96.63	97.78
VIT_12s0028g02660.t01	Wine grape	mitochondrion	77.01	76.12
AT1G06290.1	Thale cress	mitochondrion	73.65	74.52
Bra015491.1-P	Field mustard	peroxisome	73.21	74.07
CDY57818	Canola	peroxisome	73.21	74.07
KRH25680	Soybean	nucleus	72.77	73.63
CDY10192	Canola	mitochondrion	72.77	73.41
KRH55840	Soybean	nucleus	72.47	73.33
AT1G06310.1	Thale cress	peroxisome	71.01	71.85
Bra015492.1-P	Field mustard	peroxisome	68.81	69.53
CDY57822	Canola	peroxisome	68.67	69.48
CDY10194	Canola	mitochondrion, peroxisome	68.23	69.14
Bra015494.1-P	Field mustard	mitochondrion, peroxisome	57.25	67.88
GSMUA_Achr2P15230_001	Banana	peroxisome	66.47	66.86
TraesCS7D01G346400.2	Wheat	mitochondrion	66.47	66.57
TraesCS7B01G250400.1	Wheat	mitochondrion	66.33	66.42
TraesCS7A01G339100.1	Wheat	mitochondrion	66.33	66.42
HORVU7Hr1G083490.8	Barley	mitochondrion	66.03	66.03
Os06t0354500-01	Rice	plasma membrane	66.18	65.99
GSMUA_Achr6P05860_001	Banana	peroxisome	65.45	65.45
EES01747	Sorghum	plastid	65.45	65.35
Zm00001d042884_P003	Maize	extracellular	64.57	64.47
Solyc04g054890.2.1	Tomato	nucleus	29.58	29.36
Solyc08g078390.2.1	Tomato	nucleus, peroxisome, unclear	24.89	25.6
Solyc08g078400.2.1	Tomato	unclear	23.13	24.35

Protein Annotations

KEGG:00071+1.3.3.6	KEGG:00592+1.3.3.6	Gene3D:1.20.140.10	Gene3D:2.40.110.10	MapMan:5.7.3.2.1	InterPro:Acyl-CoA_Oxase/DH_cen-dom
InterPro:Acyl-CoA_oxidase	InterPro:Acyl-CoA_oxidase_C	InterPro:AcylCoA_DH/oxidase_NM_dom	InterPro:AcylCo_DH-like_C	InterPro:AcylCo_DH/oxidase_C	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003995	GO:GO:0003997	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0006629	GO:GO:0006631
GO:GO:0006635	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016627
GO:GO:0033539	GO:GO:0050660	GO:GO:0055114	GO:GO:0071949	UniProt:K4CXY8	PFAM:PF00441
PFAM:PF01756	PFAM:PF02770	PIRSF:PIRSF000168	PANTHER:PTHR10909	PANTHER:PTHR10909:SF352	SUPFAM:SSF47203
SUPFAM:SSF56645	EnsemblPlantsGene:Solyc10g008110.2	EnsemblPlants:Solyc10g008110.2.1	UniParc:UPI000276B79E	:	:

Description

Acyl-coenzyme A oxidase [Source:UniProtKB/TrEMBL;Acc:K4CXY8]

Coordinates

chr10:+:2239308..2246326

Molecular Weight (calculated)

76739.0 Da

IEP (calculated)

8.079

GRAVY (calculated)

-0.259

Length

683 amino acids

Sequence
(BLAST)

001: MQKSHFSSME KVNFRTKIIS RHLNQETPSP NLLLQSIPCL SYNPPELLEP SAIFDTKEMR KLMDGHNFVE KDWLFGLMLQ SNLFNPIERG GKVFVSPDYN
101: QSKEQQREIT MKRIGYLLEH GVFKKWLTGK GHEDELRKLG LLDCLGIYDH SLAIKVGVHF FLWGGAIQFF GTKRHHDKWL KDTEDYVIKG CFSMTELGHG
201: SNVRGIETVT TYDSSTGEFV INTPCESAQK YWIGGAANHA THTIVFSQLI IDGENQGVHA FIAQIRDENG DICPNIRIAD CGHKIGLNGV DNGRIWFDNV
301: RVPRENLLNS VADVSPDGKY LTAIKDPDQR FAAFLSPLTS GRVTIAASAV YSAKIGLATA IRYSLTRRAF SVTPNGPEVL ILDYPSHQRR LLPLLAKTYA
401: MSFAANQLKM MYVKRTPEMN KVIHVVSSAF KASASWHNMR TLQECREACG GQGLKTENRI GQLKGEYDVQ STFEGDNNVL MQQVSKALFG EYVAAKRSKK
501: PFRGLGLEHM NTSRPVIPSQ LTSITMRQAQ FQNDIFCLRE RDLLERFAAE VSQCQAQGKS KEYAFTLNYQ LAEDLGRAFS DRAVLHTFLD AEASVTSGPL
601: KNVLDLVRSM YVLITLEEDA AFLRYGYLSM DNAAIVRKEV AKLCSELRPH ALSLVSSFGL PDAFLSPIAF NWVEANAWSS EQN

Best Arabidopsis Sequence Match ( AT1G06290.1 )
(BLAST)

001: MSDNRALRRA HVLANHILQS NPPSSNPSLS RELCLQYSPP ELNESYGFDV KEMRKLLDGH NVVDRDWIYG LMMQSNLFNR KERGGKIFVS PDYNQTMEQQ
101: REITMKRIWY LLENGVFKGW LTETGPEAEL RKLALLEVCG IYDHSVSIKV GVHFFLWGNA VKFFGTKRHH EKWLKNTEDY VVKGCFAMTE LGHGSNVRGI
201: ETVTTYDPKT EEFVINTPCE SAQKYWIGGA ANHATHTIVF SQLHINGTNQ GVHAFIAQIR DQDGSICPNI RIADCGHKIG LNGVDNGRIW FDNLRIPREN
301: LLNAVADVSS DGKYVSSIKD PDQRFGAFMA PLTSGRVTIA SSAIYSAKVG LSIAIRYSLS RRAFSVTANG PEVLLLDYPS HQRRLLPLLA KTYAMSFAAN
401: ELKMIYVKRT PETNKAIHVV SSGFKAVLTW HNMHTLQECR EAVGGQGVKT ENLVGQLKGE FDVQTTFEGD NNVLMQQVSK ALFAEYVSCK KRNKPFKGLG
501: LEHMNSPRPV LPTQLTSSTL RCSQFQTNVF CLRERDLLEQ FTSEVAQLQG RGESREFSFL LSHQLAEDLG KAFTEKAILQ TILDAEAKLP TGSVKDVLGL
601: VRSMYALISL EEDPSLLRYG YLSQDNVGDV RREVSKLCGE LRPHALALVT SFGIPDSFLS PIAFNWVEAN AWSSV

Arabidopsis Description

ACX3Acyl-coenzyme A oxidase 3, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:P0CZ23]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.