CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
peroxisome 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91893
KXG29172
OQU84058

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06290.1	EER91893	AT5G65940.1	21798944
AT1G06290.1	KXG29172	AT5G65940.1	21798944
AT1G06290.1	OQU84058	AT5G65940.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042884_P003	Maize	extracellular	93.86	93.86
TraesCS7D01G346400.2	Wheat	mitochondrion	82.16	82.4
HORVU7Hr1G083490.8	Barley	mitochondrion	82.16	82.28
TraesCS7B01G250400.1	Wheat	mitochondrion	82.02	82.26
TraesCS7A01G339100.1	Wheat	mitochondrion	81.87	82.11
Os06t0354500-01	Rice	plasma membrane	81.43	81.31
GSMUA_Achr2P15230_001	Banana	peroxisome	68.71	69.22
KRH25680	Soybean	nucleus	66.67	67.56
KRH55840	Soybean	nucleus	66.08	66.96
GSMUA_Achr6P05860_001	Banana	peroxisome	66.08	66.18
VIT_12s0028g02660.t01	Wine grape	mitochondrion	66.81	66.14
PGSC0003DMT400027351	Potato	cytosol, extracellular	65.2	66.07
Solyc10g008110.2.1	Tomato	nucleus	65.35	65.45
CDY57818	Canola	peroxisome	63.89	64.74
Bra015491.1-P	Field mustard	peroxisome	63.89	64.74
AT1G06290.1	Thale cress	mitochondrion	63.6	64.44
CDY10192	Canola	mitochondrion	63.74	64.4
AT1G06310.1	Thale cress	peroxisome	61.11	61.93
CDY10194	Canola	mitochondrion, peroxisome	60.53	61.42
CDY57822	Canola	peroxisome	60.38	61.19
Bra015492.1-P	Field mustard	peroxisome	59.94	60.65
PGSC0003DMT400056247	Potato	mitochondrion	25.44	60.42
Bra015494.1-P	Field mustard	mitochondrion, peroxisome	50.73	60.24
OQU83808	Sorghum	mitochondrion, peroxisome	28.36	31.39
KXG19087	Sorghum	peroxisome	25.58	26.2
EER87896	Sorghum	peroxisome	25.29	25.94

Protein Annotations

KEGG:00071+1.3.3.6	KEGG:00592+1.3.3.6	Gene3D:1.20.140.10	Gene3D:2.40.110.10	MapMan:5.7.3.2.1	EntrezGene:8060086
InterPro:Acyl-CoA_Oxase/DH_cen-dom	InterPro:Acyl-CoA_oxidase	InterPro:Acyl-CoA_oxidase_C	InterPro:AcylCoA_DH/oxidase_NM_dom	InterPro:AcylCo_DH-like_C	InterPro:AcylCo_DH/oxidase_C
UniProt:C5XPR4	EnsemblPlants:EES01747	ProteinID:EES01747	ProteinID:EES01747.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003995	GO:GO:0003997	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0006629	GO:GO:0006631	GO:GO:0006635
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016627	GO:GO:0033539
GO:GO:0050660	GO:GO:0055114	GO:GO:0071949	PFAM:PF00441	PFAM:PF01756	PFAM:PF02770
PIRSF:PIRSF000168	PANTHER:PTHR10909	PANTHER:PTHR10909:SF352	MetaCyc:PWY-5136	MetaCyc:PWY-6837	MetaCyc:PWY-6920
MetaCyc:PWY-7007	MetaCyc:PWY-7288	MetaCyc:PWY-7291	MetaCyc:PWY-7337	MetaCyc:PWY-7338	MetaCyc:PWY-7340
MetaCyc:PWY-735	MetaCyc:PWY-7606	MetaCyc:PWY-7726	EnsemblPlantsGene:SORBI_3003G354400	SUPFAM:SSF47203	SUPFAM:SSF56645
unigene:Sbi.1194	UniParc:UPI0001A84514	RefSeq:XP_002456627.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:67314095..67320111

Molecular Weight (calculated)

76148.7 Da

IEP (calculated)

7.739

GRAVY (calculated)

-0.134

Length

684 amino acids

Sequence
(BLAST)

001: MDPTSPSPAA RRAAAVARHL AGATAPFPAS TPLEPSCCLS YVPPESTERP AAFAPGDLRL LLDGHDLPAR DWLFRAMEES PLFRSPSART GSRVFVGADL
101: NDGKEGQREA TMRRIAYLKQ RGVFRGWLTK DGADAELRKL ALLDCIAIYD HSLAIKIGVH FFLWGSAIKF LGTKRHHDKW LVATENYDIM GCFAMTELGH
201: GSNVRGIETI ATYDSETREF IINTPCESAQ KYWIGGAANH ATHTIVFCQL HINGRNEGVH AFVAQIRDED GTVLPNIRIA DCGHKIGLNG VDNGRIWFQN
301: IRVPRENLLN LVADVLPDGQ YVSMIDDPDQ RFAAFLSPLT LGRVNIAVDS VYISKVSLAI AVRYSLSRRA FSITPDGPET LLLDYPSHQR RLLPLLAKVC
401: LMSSAANFMK NMYVKRTPEM SKAIHIYSSA LKATLTWQNM MTLQECREAC GGQGLKTENR VGVFKAEFDV QSTFEGDNNV LMQQVSKALY AEFLGAQKKK
501: RPFKGLGLEH LNGSTPVIPD KLTSNILRSS KFQMDLFCLR ERDLLKQFAE EVSLHLAQGE SREKALMLSY QLAEDLARAF TERTILQIFL EDERNVPSGS
601: LKEVLGLLRS LYVMVNIDES TSFLRYGYLS RDNVALVRKE VLKMCSELRP HALAVVSSFG IPDAFLSPLA FDWIEANTLS TGSH

Best Arabidopsis Sequence Match ( AT1G06290.1 )
(BLAST)

001: MSDNRALRRA HVLANHILQS NPPSSNPSLS RELCLQYSPP ELNESYGFDV KEMRKLLDGH NVVDRDWIYG LMMQSNLFNR KERGGKIFVS PDYNQTMEQQ
101: REITMKRIWY LLENGVFKGW LTETGPEAEL RKLALLEVCG IYDHSVSIKV GVHFFLWGNA VKFFGTKRHH EKWLKNTEDY VVKGCFAMTE LGHGSNVRGI
201: ETVTTYDPKT EEFVINTPCE SAQKYWIGGA ANHATHTIVF SQLHINGTNQ GVHAFIAQIR DQDGSICPNI RIADCGHKIG LNGVDNGRIW FDNLRIPREN
301: LLNAVADVSS DGKYVSSIKD PDQRFGAFMA PLTSGRVTIA SSAIYSAKVG LSIAIRYSLS RRAFSVTANG PEVLLLDYPS HQRRLLPLLA KTYAMSFAAN
401: ELKMIYVKRT PETNKAIHVV SSGFKAVLTW HNMHTLQECR EAVGGQGVKT ENLVGQLKGE FDVQTTFEGD NNVLMQQVSK ALFAEYVSCK KRNKPFKGLG
501: LEHMNSPRPV LPTQLTSSTL RCSQFQTNVF CLRERDLLEQ FTSEVAQLQG RGESREFSFL LSHQLAEDLG KAFTEKAILQ TILDAEAKLP TGSVKDVLGL
601: VRSMYALISL EEDPSLLRYG YLSQDNVGDV RREVSKLCGE LRPHALALVT SFGIPDSFLS PIAFNWVEAN AWSSV

Arabidopsis Description

ACX3Acyl-coenzyme A oxidase 3, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:P0CZ23]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.