Factsheet for PGSC0003DMT400056247

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 1
peroxisome 2

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000043
PGSC0003DMT400000054
PGSC0003DMT400004521
PGSC0003DMT400004567
PGSC0003DMT400004585
PGSC0003DMT400066409
PGSC0003DMT400066411
PGSC0003DMT400066414
PGSC0003DMT400066419
PGSC0003DMT400066424

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06290.1	PGSC0003DMT400000043	AT5G65940.1	21798944
AT1G06290.1	PGSC0003DMT400000054	AT5G65940.1	21798944
AT1G06290.1	PGSC0003DMT400004521	AT5G65940.1	21798944
AT1G06290.1	PGSC0003DMT400004567	AT5G65940.1	21798944
AT1G06290.1	PGSC0003DMT400004585	AT5G65940.1	21798944
AT1G06290.1	PGSC0003DMT400066409	AT5G65940.1	21798944
AT1G06290.1	PGSC0003DMT400066411	AT5G65940.1	21798944
AT1G06290.1	PGSC0003DMT400066414	AT5G65940.1	21798944
AT1G06290.1	PGSC0003DMT400066419	AT5G65940.1	21798944
AT1G06290.1	PGSC0003DMT400066424	AT5G65940.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027351	Potato	cytosol, extracellular	84.38	36.0
Bra015494.1-P	Field mustard	mitochondrion, peroxisome	63.54	31.77
KRH55840	Soybean	nucleus	69.44	29.63
AT1G06290.1	Thale cress	mitochondrion	69.44	29.63
KRH25680	Soybean	nucleus	68.75	29.33
CDY10192	Canola	mitochondrion	68.4	29.1
Bra015491.1-P	Field mustard	peroxisome	68.06	29.04
CDY57818	Canola	peroxisome	68.06	29.04
VIT_12s0028g02660.t01	Wine grape	mitochondrion	67.36	28.08
AT1G06310.1	Thale cress	peroxisome	64.93	27.7
Bra015492.1-P	Field mustard	peroxisome	64.93	27.66
CDY10194	Canola	mitochondrion, peroxisome	64.58	27.6
TraesCS7D01G346400.2	Wheat	mitochondrion	64.93	27.42
TraesCS7B01G250400.1	Wheat	mitochondrion	64.93	27.42
CDY57822	Canola	peroxisome	63.89	27.26
TraesCS7A01G339100.1	Wheat	mitochondrion	64.24	27.13
Os06t0354500-01	Rice	plasma membrane	64.24	27.01
HORVU7Hr1G083490.8	Barley	mitochondrion	63.89	26.94
GSMUA_Achr2P15230_001	Banana	peroxisome	61.81	26.21
Zm00001d042884_P003	Maize	extracellular	60.76	25.58
EES01747	Sorghum	plastid	60.42	25.44
GSMUA_Achr6P05860_001	Banana	peroxisome	58.68	24.74
PGSC0003DMT400053145	Potato	peroxisome	28.82	11.98
PGSC0003DMT400012318	Potato	peroxisome	24.65	10.69
PGSC0003DMT400012322	Potato	peroxisome	24.31	10.54

Protein Annotations

EnsemblPlants:PGSC0003DMT400056247	EnsemblPlantsGene:PGSC0003DMG400021853	Gene3D:2.40.110.10	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016627	GO:GO:0050660	GO:GO:0055114
InterPro:Acyl-CoA_Oxase/DH_cen-dom	InterPro:AcylCoA_DH/oxidase_NM_dom	PANTHER:PTHR10909	PANTHER:PTHR10909:SF352	PFAM:PF02770	PGSC:PGSC0003DMG400021853
SUPFAM:SSF56645	UniParc:UPI0002967406	UniProt:M1BZ65	MapMan:5.7.3.2.1	:	:

Description

Acyl-CoA oxidase ACX3 [Source:PGSC_GENE;Acc:PGSC0003DMG400021853]

Coordinates

chr10:+:3486427..3491413

Molecular Weight (calculated)

32749.4 Da

IEP (calculated)

8.149

GRAVY (calculated)

-0.282

Length

288 amino acids

Sequence
(BLAST)

001: MEKVNFRTKV LSRHLKQETP ILNVILQSLP CLSYNPPELS EPAAVFYIKE MRKLMDGHNL EERDWFFGLI LQSKIFNPVK RGGKVFLSPN YSQSKEQQRQ
101: ITMRRIQYLV EHGFSKDWLT VKGPEDELRK LALLDCLFIY DHSLSIKMGV HFLLWGGAIQ FFGTKRHHDK WLKDTEDYVV KGCFSMTELG HGSNVRGIET
201: VTTYDSSTGE FVINTPCESA QKYWIGGAAN HATRTIVFSQ LIIDGGNQGV HAFIAQIRDE NGDICLNIRI ADCGHKIGLN GVDNGRIS

Best Arabidopsis Sequence Match ( AT1G06290.1 )
(BLAST)

001: MSDNRALRRA HVLANHILQS NPPSSNPSLS RELCLQYSPP ELNESYGFDV KEMRKLLDGH NVVDRDWIYG LMMQSNLFNR KERGGKIFVS PDYNQTMEQQ
101: REITMKRIWY LLENGVFKGW LTETGPEAEL RKLALLEVCG IYDHSVSIKV GVHFFLWGNA VKFFGTKRHH EKWLKNTEDY VVKGCFAMTE LGHGSNVRGI
201: ETVTTYDPKT EEFVINTPCE SAQKYWIGGA ANHATHTIVF SQLHINGTNQ GVHAFIAQIR DQDGSICPNI RIADCGHKIG LNGVDNGRIW FDNLRIPREN
301: LLNAVADVSS DGKYVSSIKD PDQRFGAFMA PLTSGRVTIA SSAIYSAKVG LSIAIRYSLS RRAFSVTANG PEVLLLDYPS HQRRLLPLLA KTYAMSFAAN
401: ELKMIYVKRT PETNKAIHVV SSGFKAVLTW HNMHTLQECR EAVGGQGVKT ENLVGQLKGE FDVQTTFEGD NNVLMQQVSK ALFAEYVSCK KRNKPFKGLG
501: LEHMNSPRPV LPTQLTSSTL RCSQFQTNVF CLRERDLLEQ FTSEVAQLQG RGESREFSFL LSHQLAEDLG KAFTEKAILQ TILDAEAKLP TGSVKDVLGL
601: VRSMYALISL EEDPSLLRYG YLSQDNVGDV RREVSKLCGE LRPHALALVT SFGIPDSFLS PIAFNWVEAN AWSSV

Arabidopsis Description

ACX3Acyl-coenzyme A oxidase 3, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:P0CZ23]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.