Factsheet for PGSC0003DMT400012322

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
peroxisome 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	nucleus, peroxisome
BaCelLo:	nucleus
EpiLoc:	peroxisome
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	peroxisome
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g078390.2.1	Tomato	nucleus, peroxisome, unclear	98.8	98.8
PGSC0003DMT400012318	Potato	peroxisome	83.89	83.89
KRH57460	Soybean	nucleus	82.53	82.41
KRH28148	Soybean	peroxisome	82.38	82.13
KRH16000	Soybean	cytosol, peroxisome	57.38	82.11
CDY42938	Canola	peroxisome	80.87	80.87
CDY59471	Canola	peroxisome	80.87	80.87
Bra040093.1-P	Field mustard	peroxisome	80.72	80.72
AT4G16760.1	Thale cress	peroxisome	79.67	79.67
GSMUA_Achr7P07440_001	Banana	peroxisome	78.77	78.53
AT2G35690.1	Thale cress	peroxisome	77.71	77.71
CDX84603	Canola	peroxisome	76.96	76.96
CDX79618	Canola	peroxisome	76.96	76.96
Bra023025.1-P	Field mustard	peroxisome	76.96	76.96
KRH04170	Soybean	nucleus	62.05	75.87
KXG19087	Sorghum	peroxisome	76.2	75.75
Os06t0103500-01	Rice	peroxisome	76.05	75.49
KRH77335	Soybean	peroxisome	82.68	75.31
TraesCS7A01G003900.1	Wheat	peroxisome, unclear	75.75	75.3
TraesCS4A01G494700.1	Wheat	golgi, peroxisome	75.6	75.15
TraesCS7D01G004400.1	Wheat	peroxisome	75.45	74.89
Zm00001d045251_P001	Maize	peroxisome	75.0	74.66
EER87896	Sorghum	peroxisome	74.85	74.51
Zm00001d045606_P002	Maize	peroxisome	74.4	70.98
VIT_00s0389g00020.t01	Wine grape	nucleus, peroxisome	68.52	52.66
HORVU2Hr1G031180.5	Barley	peroxisome	22.44	50.17
PGSC0003DMT400027351	Potato	cytosol, extracellular	25.0	24.59
PGSC0003DMT400053145	Potato	peroxisome	25.6	24.53
PGSC0003DMT400056247	Potato	mitochondrion	10.54	24.31

Protein Annotations

KEGG:00071+1.3.3.6	KEGG:00592+1.3.3.6	Gene3D:1.10.540.10	Gene3D:1.20.140.10	EntrezGene:102587406	MapMan:11.7.1.8
Gene3D:2.40.110.10	MapMan:5.7.3.2.1	InterPro:Acyl-CoA_Oxase/DH_cen-dom	InterPro:Acyl-CoA_ox_N	InterPro:Acyl-CoA_oxidase	InterPro:Acyl-CoA_oxidase_C
InterPro:AcylCoA_DH/ox_N_sf	InterPro:AcylCoA_DH/oxidase_NM_dom	InterPro:AcylCo_DH-like_C	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003997	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005777	GO:GO:0006629	GO:GO:0006631	GO:GO:0006635	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016627	GO:GO:0050660	GO:GO:0055114	GO:GO:0071949
InterPro:IPR037069	UniProt:M1A129	PFAM:PF01756	PFAM:PF02770	PFAM:PF14749	EnsemblPlantsGene:PGSC0003DMG400004828
PGSC:PGSC0003DMG400004828	EnsemblPlants:PGSC0003DMT400012322	PIRSF:PIRSF000168	PANTHER:PTHR10909	PANTHER:PTHR10909:SF369	SUPFAM:SSF47203
SUPFAM:SSF56645	UniParc:UPI000296D965	RefSeq:XP_006355420.1	SEG:seg	:	:

Description

Peroxisomal acyl-CoA oxidase 1A [Source:PGSC_GENE;Acc:PGSC0003DMG400004828]

Coordinates

chr8:+:52041647..52050466

Molecular Weight (calculated)

74342.1 Da

IEP (calculated)

8.044

GRAVY (calculated)

-0.275

Length

664 amino acids

Sequence
(BLAST)

001: MEGVDYLADE RKKAGFDVDE MKIVWAGSRH DFELTDRISK LVANDPGFSK EGRTMLPRKE LFKNTLRKAA YAWKRIIELR LSQEEATMLR RYVDEPAFTD
101: LHWGMFIPAL KGQGTDKQQE KWLPLAYKMQ IIGCYAQTEL GHGSNVQGLE TTATFDPQTD EFVIHSPTLT SSKWWPGGLG KVSTHAVVYA RLITDGKDYG
201: VNGFIVQLRS LEDHKPLPGV TVGDIGMKFG NGAYNSMDNG VLSFDHVRIP RDQMLMRVSQ VTKEGKYVQS DIPRQLLYGT MVYVRQSIVS DASLAMSRAV
301: CIATRYSAVR RQFGSQNGGQ ETQVIDYKTQ QNRLFPLLAS AYAFRFVGEW LKWLYTDVTQ RLAANDFSTL PEAHACTAGL KSLTTSATAD GIEECRKLCG
401: GHGYLCSSGL PELFAVYVPA CTYEGDNVVL QLQVARFLMK TVSQLGTGKK PVGTVSYMGR IEQLMQCRSD VKQAEDWLKP SAVLEAFEAR SARMSVACAK
501: NLSKFENQEE GFAELAADLV EAAVAHCQLI VVSKYIEKLQ QNIPGKGVKQ QLEVLCGIYS LFLLHKHQGD FLGTGYITSK QGSLANDQLR ALYSQLRPNA
601: ISLVDAFNYT DHYLDSILGR YDGNVYPKLY EAAWKDPLNK SDIADGFHEY IRPLLKQQLR TAKL

Best Arabidopsis Sequence Match ( AT4G16760.1 )
(BLAST)

001: MEGIDHLADE RNKAEFDVED MKIVWAGSRH AFEVSDRIAR LVASDPVFEK SNRARLSRKE LFKSTLRKCA HAFKRIIELR LNEEEAGRLR HFIDQPAYVD
101: LHWGMFVPAI KGQGTEEQQK KWLSLANKMQ IIGCYAQTEL GHGSNVQGLE TTATFDPKTD EFVIHTPTQT ASKWWPGGLG KVSTHAVVYA RLITNGKDYG
201: IHGFIVQLRS LEDHSPLPNI TVGDIGTKMG NGAYNSMDNG FLMFDHVRIP RDQMLMRLSK VTREGEYVPS DVPKQLVYGT MVYVRQTIVA DASNALSRAV
301: CIATRYSAVR RQFGAHNGGI ETQVIDYKTQ QNRLFPLLAS AYAFRFVGEW LKWLYTDVTE RLAASDFATL PEAHACTAGL KSLTTTATAD GIEECRKLCG
401: GHGYLWCSGL PELFAVYVPA CTYEGDNVVL QLQVARFLMK TVAQLGSGKV PVGTTAYMGR AAHLLQCRSG VQKAEDWLNP DVVLEAFEAR ALRMAVTCAK
501: NLSKFENQEQ GFQELLADLV EAAIAHCQLI VVSKFIAKLE QDIGGKGVKK QLNNLCYIYA LYLLHKHLGD FLSTNCITPK QASLANDQLR SLYTQVRPNA
601: VALVDAFNYT DHYLNSVLGR YDGNVYPKLF EEALKDPLND SVVPDGYQEY LRPVLQQQLR TARL

Arabidopsis Description

ACX1Peroxisomal acyl-coenzyme A oxidase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65202]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.