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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 1
  • peroxisome 5
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus, peroxisome
BaCelLo:nucleus
EpiLoc:peroxisome
MultiLoc:peroxisome
Plant-mPloc:peroxisome
PProwler:peroxisome
WoLF PSORT:cytosol
YLoc:peroxisome
 peroxisome: 19073762
nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 19073762 doi
Y Arai, M Hayashi, M Nishimura
Department of Cell Biology, National Institute for Basic Biology, Okazaki 444-8585 Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH04170 Soybean nucleus 72.78 89.13
KRH28148 Soybean peroxisome 87.67 87.54
KRH16000 Soybean cytosol, peroxisome 60.75 87.07
Solyc08g078390.2.1 Tomato nucleus, peroxisome, unclear 82.41 82.53
PGSC0003DMT400012322 Potato peroxisome 82.41 82.53
CDY42938 Canola peroxisome 81.35 81.48
CDY59471 Canola peroxisome 81.35 81.48
Bra040093.1-P Field mustard peroxisome 81.2 81.33
AT4G16760.1 Thale cress peroxisome 80.45 80.57
KRH77335 Soybean peroxisome 87.97 80.25
GSMUA_Achr7P07440_001 Banana peroxisome 79.7 79.58
AT2G35690.1 Thale cress peroxisome 78.2 78.31
PGSC0003DMT400012318 Potato peroxisome 78.2 78.31
CDX79618 Canola peroxisome 77.29 77.41
CDX84603 Canola peroxisome 76.99 77.11
Bra023025.1-P Field mustard peroxisome 76.99 77.11
TraesCS7D01G004400.1 Wheat peroxisome 77.29 76.83
TraesCS4A01G494700.1 Wheat golgi, peroxisome 77.14 76.8
Zm00001d045251_P001 Maize peroxisome 76.99 76.76
TraesCS7A01G003900.1 Wheat peroxisome, unclear 76.99 76.65
Solyc08g078400.2.1 Tomato unclear 74.74 76.58
KXG19087 Sorghum peroxisome 76.84 76.5
EER87896 Sorghum peroxisome 76.54 76.31
Os06t0103500-01 Rice peroxisome 76.24 75.78
Zm00001d045606_P002 Maize peroxisome 75.19 71.84
VIT_00s0389g00020.t01 Wine grape nucleus, peroxisome 69.17 53.24
HORVU2Hr1G031180.5 Barley peroxisome 22.56 50.51
KRH59378 Soybean nucleus 27.07 26.63
KRH25680 Soybean nucleus 25.41 25.04
KRH55840 Soybean nucleus 25.26 24.89
Protein Annotations
KEGG:00071+1.3.3.6KEGG:00592+1.3.3.6Gene3D:1.10.540.10Gene3D:1.20.140.10MapMan:11.7.1.8Gene3D:2.40.110.10
MapMan:5.7.3.2.1EntrezGene:547626EMBL:ACUP02002834EMBL:AF404404InterPro:Acyl-CoA_Oxase/DH_cen-domInterPro:Acyl-CoA_ox_N
InterPro:Acyl-CoA_oxidaseInterPro:Acyl-CoA_oxidase_CInterPro:AcylCoA_DH/ox_N_sfInterPro:AcylCoA_DH/oxidase_NM_domInterPro:AcylCo_DH-like_CEnsemblPlantsGene:GLYMA_05G062200
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0003995GO:GO:0003997GO:GO:0005488
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005777GO:GO:0006629
GO:GO:0006631GO:GO:0006635GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009987
GO:GO:0016491GO:GO:0016627GO:GO:0033539GO:GO:0050660GO:GO:0055114GO:GO:0071949
InterPro:IPR037069EnsemblPlants:KRH57460ProteinID:KRH57460ProteinID:KRH57460.1PFAM:PF01756PFAM:PF02770
PFAM:PF14749PIRSF:PIRSF000168PANTHER:PTHR10909PANTHER:PTHR10909:SF369MetaCyc:PWY-5136MetaCyc:PWY-6837
MetaCyc:PWY-6920MetaCyc:PWY-7007MetaCyc:PWY-7288MetaCyc:PWY-7291MetaCyc:PWY-7337MetaCyc:PWY-7338
MetaCyc:PWY-7340MetaCyc:PWY-735MetaCyc:PWY-7574MetaCyc:PWY-7606MetaCyc:PWY-7726MetaCyc:PWY-7854
MetaCyc:PWY-7858UniProt:Q945U3SUPFAM:SSF47203SUPFAM:SSF56645UniParc:UPI00000A65DF:
Description
hypothetical protein
Coordinates
chr5:-:5856950..5863623
Molecular Weight (calculated)
74539.8 Da
IEP (calculated)
8.201
GRAVY (calculated)
-0.189
Length
665 amino acids
Sequence
(BLAST)
001: MEGMVDHLAF ERNNSQFDVD EMKIVWAGSR HAFEVSDKMA RLVASDPAFR KDDRVVLDRK ALFKNTLRKA AYAWKRIIEL RLSEEEAAML RSFVDQPAFT
101: DLHWGMFVPA IKGQGTEEQQ KKWLPLAHKM QIIGCYAQTE LGHGSNVQGL ETTATFDPRT DEFVIHSPTL TSSKWWPGGL GKVSTHAVVY ARLITDGQDH
201: GVHGFIVQLR SLDDHLPLPG ITVGDIGMKF GNGAYNSMDN GMLRFDHVRI PRNQMLMRVS QVTREGKYVQ SSVPRQLVYG TMVYVRQTIV SDASVALSRA
301: VCIATRYSAV RRQFGSKEGG LETQVIDYKT QQARLFPLLA SAYAFRFVGE WLKWLYMDVM KRLQASDFST LPEAHACTAG LKSLTTSATA DGIEECRKLC
401: GGHGYLCSSG LPELFAVYIP TCTYEGDNTV LLLQVARHLI KTISQLGSRN KPVGTTSYIG RVEQLMQYRS DVQKVEDWLK PNAVLGAFEA RAAKKVVACA
501: QNLSKFTNPE EGFQELSVDL VEAAVAHCQL IVVSKFIEKL QQDIPGKGVK QQLELLCSIY ALFLLHKHLG DFLATGCITP KQGSLANELL RSLYSQVRPN
601: AIALVDAFNY TDHYLGSVLG RYDGDVYPKL YEEAWKDPLN DSVVPDGFQE YIRPMLKQQL RNARL
Best Arabidopsis Sequence Match ( AT4G16760.1 )
(BLAST)
001: MEGIDHLADE RNKAEFDVED MKIVWAGSRH AFEVSDRIAR LVASDPVFEK SNRARLSRKE LFKSTLRKCA HAFKRIIELR LNEEEAGRLR HFIDQPAYVD
101: LHWGMFVPAI KGQGTEEQQK KWLSLANKMQ IIGCYAQTEL GHGSNVQGLE TTATFDPKTD EFVIHTPTQT ASKWWPGGLG KVSTHAVVYA RLITNGKDYG
201: IHGFIVQLRS LEDHSPLPNI TVGDIGTKMG NGAYNSMDNG FLMFDHVRIP RDQMLMRLSK VTREGEYVPS DVPKQLVYGT MVYVRQTIVA DASNALSRAV
301: CIATRYSAVR RQFGAHNGGI ETQVIDYKTQ QNRLFPLLAS AYAFRFVGEW LKWLYTDVTE RLAASDFATL PEAHACTAGL KSLTTTATAD GIEECRKLCG
401: GHGYLWCSGL PELFAVYVPA CTYEGDNVVL QLQVARFLMK TVAQLGSGKV PVGTTAYMGR AAHLLQCRSG VQKAEDWLNP DVVLEAFEAR ALRMAVTCAK
501: NLSKFENQEQ GFQELLADLV EAAIAHCQLI VVSKFIAKLE QDIGGKGVKK QLNNLCYIYA LYLLHKHLGD FLSTNCITPK QASLANDQLR SLYTQVRPNA
601: VALVDAFNYT DHYLNSVLGR YDGNVYPKLF EEALKDPLND SVVPDGYQEY LRPVLQQQLR TARL
Arabidopsis Description
ACX1Peroxisomal acyl-coenzyme A oxidase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65202]
SUBAcon: [peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.