CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
peroxisome 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH07311

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06290.1	KRH07311	AT5G65940.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55840	Soybean	nucleus	96.3	96.3
VIT_12s0028g02660.t01	Wine grape	mitochondrion	75.56	73.81
PGSC0003DMT400027351	Potato	cytosol, extracellular	73.33	73.33
Solyc10g008110.2.1	Tomato	nucleus	73.63	72.77
Bra015491.1-P	Field mustard	peroxisome	71.85	71.85
CDY57818	Canola	peroxisome	71.85	71.85
CDY10192	Canola	mitochondrion	71.41	71.2
AT1G06290.1	Thale cress	mitochondrion	70.81	70.81
AT1G06310.1	Thale cress	peroxisome	69.19	69.19
Bra015492.1-P	Field mustard	peroxisome	69.19	69.08
CDY10194	Canola	mitochondrion, peroxisome	68.74	68.84
PGSC0003DMT400056247	Potato	mitochondrion	29.33	68.75
CDY57822	Canola	peroxisome	68.15	68.15
TraesCS7B01G250400.1	Wheat	mitochondrion	68.15	67.45
TraesCS7D01G346400.2	Wheat	mitochondrion	68.0	67.3
TraesCS7A01G339100.1	Wheat	mitochondrion	68.0	67.3
HORVU7Hr1G083490.8	Barley	mitochondrion	68.0	67.2
GSMUA_Achr2P15230_001	Banana	peroxisome	67.56	67.16
Bra015494.1-P	Field mustard	mitochondrion, peroxisome	57.19	67.01
EES01747	Sorghum	plastid	67.56	66.67
GSMUA_Achr6P05860_001	Banana	peroxisome	67.11	66.33
Zm00001d042884_P003	Maize	extracellular	66.67	65.79
Os06t0354500-01	Rice	plasma membrane	66.67	65.69
KRH59378	Soybean	nucleus	30.81	30.77
KRH16000	Soybean	cytosol, peroxisome	19.26	28.02
KRH57460	Soybean	nucleus	25.04	25.41
KRH28148	Soybean	peroxisome	24.44	24.77
KRH04170	Soybean	nucleus	19.85	24.68
KRH77335	Soybean	peroxisome	24.59	22.77

Protein Annotations

KEGG:00071+1.3.3.6	KEGG:00592+1.3.3.6	Gene3D:1.20.140.10	EntrezGene:100780811	Gene3D:2.40.110.10	MapMan:5.7.3.2.1
EMBL:ACUP02007315	InterPro:Acyl-CoA_Oxase/DH_cen-dom	InterPro:Acyl-CoA_oxidase	InterPro:Acyl-CoA_oxidase_C	InterPro:AcylCoA_DH/oxidase_NM_dom	InterPro:AcylCo_DH-like_C
InterPro:AcylCo_DH/oxidase_C	EnsemblPlantsGene:GLYMA_12G120300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003995
GO:GO:0003997	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005777	GO:GO:0006629	GO:GO:0006631	GO:GO:0006635	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016627	GO:GO:0033539	GO:GO:0050660	GO:GO:0055114
GO:GO:0071949	UniProt:I1LS94	EnsemblPlants:KRH25680	ProteinID:KRH25680	ProteinID:KRH25680.1	PFAM:PF00441
PFAM:PF01756	PFAM:PF02770	PIRSF:PIRSF000168	PANTHER:PTHR10909	PANTHER:PTHR10909:SF352	MetaCyc:PWY-5136
MetaCyc:PWY-6837	MetaCyc:PWY-6920	MetaCyc:PWY-7007	MetaCyc:PWY-7288	MetaCyc:PWY-7291	MetaCyc:PWY-7337
MetaCyc:PWY-7338	MetaCyc:PWY-7340	MetaCyc:PWY-735	MetaCyc:PWY-7574	MetaCyc:PWY-7606	MetaCyc:PWY-7726
MetaCyc:PWY-7854	MetaCyc:PWY-7858	SUPFAM:SSF47203	SUPFAM:SSF56645	UniParc:UPI000233C8A7	SEG:seg

Description

hypothetical protein

Coordinates

chr12:-:12813387..12819326

Molecular Weight (calculated)

75924.9 Da

IEP (calculated)

8.668

GRAVY (calculated)

-0.252

Length

675 amino acids

Sequence
(BLAST)

001: MTDNDRVSRR TEVLTNHLLR RTPPPSLLRP LPCLSYSPPE LSNTISFDTR EMRKLMDCHN LEDRDWLFSL ILQSPLFNPR HRAGRFFVCP DYNQPMEHQR
101: QATMKRIAYL LDKGVFRGWL TGNGPEQELR KLALHEVIGM YDHSLAVKLG VHFFLWGGAV KFLGTKRHHD KWLNSTENYD IKGCFAMSEL GHGSNVRGIE
201: TVTTYDSNTG EFVINTPCES GQKYWIGGAA NHATHTIVFS QLYINGSNQG VHAFIAQIRD SDGNICPNIR IADCGHKIGL NGVDNGRIWF DNVRIPRENL
301: LNSVADVSPS GEYLSAIKNA DQRFAAFLAP LTSGRVTIAV SAVYISKISL AIAIRYALTR RAFSITPNGP EVLLLDYPSH QRRLLPLLAK VYAMSFAANE
401: LKMMYVNRTP KSNKAIHIVS SAYKATLTWN NMRTLQECRE ACGGQGVKSE NRVGNFMGEF DVHSTFEGDN NVLMQQISKA LFAEYVASQK KKKPFSGLGL
501: EHMNKPLPVI PSQLTSSYIR NSEFQIDLFH LRERDLLRRF AEEVSEYQSR GESKESAFIL SYQLAEELGR AFSERAILKT FMEAESTVPA GSLKNVLGLL
601: RSLYAVICVD EDSAFLRYGY LSTENASAVR KEVPKLCAEL RPHALALVSS FGIPDAFLSP IAYNWVDSNS WSSQL

Best Arabidopsis Sequence Match ( AT1G06290.1 )
(BLAST)

001: MSDNRALRRA HVLANHILQS NPPSSNPSLS RELCLQYSPP ELNESYGFDV KEMRKLLDGH NVVDRDWIYG LMMQSNLFNR KERGGKIFVS PDYNQTMEQQ
101: REITMKRIWY LLENGVFKGW LTETGPEAEL RKLALLEVCG IYDHSVSIKV GVHFFLWGNA VKFFGTKRHH EKWLKNTEDY VVKGCFAMTE LGHGSNVRGI
201: ETVTTYDPKT EEFVINTPCE SAQKYWIGGA ANHATHTIVF SQLHINGTNQ GVHAFIAQIR DQDGSICPNI RIADCGHKIG LNGVDNGRIW FDNLRIPREN
301: LLNAVADVSS DGKYVSSIKD PDQRFGAFMA PLTSGRVTIA SSAIYSAKVG LSIAIRYSLS RRAFSVTANG PEVLLLDYPS HQRRLLPLLA KTYAMSFAAN
401: ELKMIYVKRT PETNKAIHVV SSGFKAVLTW HNMHTLQECR EAVGGQGVKT ENLVGQLKGE FDVQTTFEGD NNVLMQQVSK ALFAEYVSCK KRNKPFKGLG
501: LEHMNSPRPV LPTQLTSSTL RCSQFQTNVF CLRERDLLEQ FTSEVAQLQG RGESREFSFL LSHQLAEDLG KAFTEKAILQ TILDAEAKLP TGSVKDVLGL
601: VRSMYALISL EEDPSLLRYG YLSQDNVGDV RREVSKLCGE LRPHALALVT SFGIPDSFLS PIAFNWVEAN AWSSV

Arabidopsis Description

ACX3Acyl-coenzyme A oxidase 3, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:P0CZ23]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.