Factsheet for VIT_12s0028g02660.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
peroxisome 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_09s0002g07160.t01
VIT_15s0045g01190.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06290.1	VIT_09s0002g07160.t01	AT5G65940.1	21798944
AT1G06290.1	VIT_15s0045g01190.t01	AT5G65940.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027351	Potato	cytosol, extracellular	75.69	77.48
Solyc10g008110.2.1	Tomato	nucleus	76.12	77.01
KRH25680	Soybean	nucleus	73.81	75.56
KRH55840	Soybean	nucleus	73.66	75.41
AT1G06290.1	Thale cress	mitochondrion	71.92	73.63
Bra015491.1-P	Field mustard	peroxisome	71.64	73.33
CDY57818	Canola	peroxisome	71.64	73.33
CDY10192	Canola	mitochondrion	71.35	72.82
AT1G06310.1	Thale cress	peroxisome	70.48	72.15
CDY57822	Canola	peroxisome	68.6	70.22
CDY10194	Canola	mitochondrion, peroxisome	68.16	69.88
Bra015492.1-P	Field mustard	peroxisome	68.31	69.82
Bra015494.1-P	Field mustard	mitochondrion, peroxisome	57.6	69.1
GSMUA_Achr2P15230_001	Banana	peroxisome	67.58	68.78
GSMUA_Achr6P05860_001	Banana	peroxisome	67.87	68.67
TraesCS7A01G339100.1	Wheat	mitochondrion	66.86	67.74
TraesCS7D01G346400.2	Wheat	mitochondrion	66.71	67.6
HORVU7Hr1G083490.8	Barley	mitochondrion	66.71	67.5
TraesCS7B01G250400.1	Wheat	mitochondrion	66.57	67.45
PGSC0003DMT400056247	Potato	mitochondrion	28.08	67.36
Os06t0354500-01	Rice	plasma membrane	66.43	67.01
EES01747	Sorghum	plastid	66.14	66.81
Zm00001d042884_P003	Maize	extracellular	65.41	66.08
VIT_00s0662g00010.t01	Wine grape	peroxisome	30.97	31.15
VIT_00s0389g00020.t01	Wine grape	nucleus, peroxisome	19.54	15.62

Protein Annotations

KEGG:00071+1.3.3.6	KEGG:00592+1.3.3.6	Gene3D:1.20.140.10	EntrezGene:100257524	wikigene:100257524	Gene3D:2.40.110.10
MapMan:5.7.3.2.1	EMBL:AM476302	EMBL:AM481564	InterPro:Acyl-CoA_Oxase/DH_cen-dom	InterPro:Acyl-CoA_oxidase	InterPro:Acyl-CoA_oxidase_C
InterPro:AcylCoA_DH/oxidase_NM_dom	InterPro:AcylCo_DH-like_C	InterPro:AcylCo_DH/oxidase_C	ProteinID:CAN66343	ProteinID:CAN66343.1	ProteinID:CAN77404
ProteinID:CAN77404.1	ProteinID:CCB47341	ProteinID:CCB47341.1	UniProt:F6H4X3	EMBL:FN595235	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003995	GO:GO:0003997	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0006629	GO:GO:0006631
GO:GO:0006635	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016627
GO:GO:0033539	GO:GO:0050660	GO:GO:0055114	GO:GO:0071949	EntrezGene:LOC100257524	wikigene:LOC100257524
PFAM:PF00441	PFAM:PF01756	PFAM:PF02770	PIRSF:PIRSF000168	PANTHER:PTHR10909	PANTHER:PTHR10909:SF352
SUPFAM:SSF47203	SUPFAM:SSF56645	TIGR:TC62468	TIGR:TC67890	TIGR:TC69753	UniParc:UPI00015C943D
ArrayExpress:VIT_12s0028g02660	EnsemblPlantsGene:VIT_12s0028g02660	EnsemblPlants:VIT_12s0028g02660.t01	unigene:Vvi.4591	RefSeq:XP_002278663	RefSeq:XP_002278663.1
SEG:seg	:	:	:	:	:

Description

Acyl-coenzyme A oxidase [Source:UniProtKB/TrEMBL;Acc:F6H4X3]

Coordinates

chr12:+:3448285..3455362

Molecular Weight (calculated)

77100.5 Da

IEP (calculated)

8.214

GRAVY (calculated)

-0.207

Length

691 amino acids

Sequence
(BLAST)

001: MGSPSPADQV SRRAQALAGH LRGLHTSMEP SLSPSPCLQY SPPELASPPS DFNLSDMRKL MDGHNLQDRD WLFGLMIQSK LFNPRVAGGR VFVSPDYNQS
101: MEQQREMTMK RIHYLLDCGV FQEWLTGRGP EVEMRKFALH EVIGMYDHSL AVKLGVHYFL WGGAIQFFGT KRHHDKWLRD SENYVIKGCF AMTELGHGSN
201: VRGIETVTTY DSKTGEFVIN SPCESAQKYW IGGAANHATH TIVFSQLNIN GKSEGVHAFI AQIRDTDGNI CPNVRVADCG HKIGLNGVDN GRIWFDNVRI
301: PRENLLNSVA DVSPDGQYLS AIKDPDQRFA AFLAPLTSGR VTIATSAVYS SKMSLAIAIR YSLTRRAFSI TPNQPEVLLL DYPSHQRRLL PLLAKTYAMS
401: FAANYLKMIY VKRTPESNKT IHVVSSAFKA ILTWHNMRTL QECREACGGQ GLKTENRIGQ MKGEYDVQST FEGDNNVLMQ QVSKALLAEY IAVQKRNRPF
501: KGLGLEHMNK SCPVVPSQLT SSTLRSSQFQ TDIFCLRERD LLIRFAAEMS QLQAQGLSRE YALLQSYQLA EDLGRAFSDR AILQTFLDAE AAVSSGPLKS
601: MLSLLRSMHV LIILEEDASF LRYGYLSPDN AAGIRKEVTI LCSELRPHAL ALVSSFGIPD AFLSPIAFNW IDANSWSSVQ PQQGATVPLQ I

Best Arabidopsis Sequence Match ( AT1G06290.1 )
(BLAST)

001: MSDNRALRRA HVLANHILQS NPPSSNPSLS RELCLQYSPP ELNESYGFDV KEMRKLLDGH NVVDRDWIYG LMMQSNLFNR KERGGKIFVS PDYNQTMEQQ
101: REITMKRIWY LLENGVFKGW LTETGPEAEL RKLALLEVCG IYDHSVSIKV GVHFFLWGNA VKFFGTKRHH EKWLKNTEDY VVKGCFAMTE LGHGSNVRGI
201: ETVTTYDPKT EEFVINTPCE SAQKYWIGGA ANHATHTIVF SQLHINGTNQ GVHAFIAQIR DQDGSICPNI RIADCGHKIG LNGVDNGRIW FDNLRIPREN
301: LLNAVADVSS DGKYVSSIKD PDQRFGAFMA PLTSGRVTIA SSAIYSAKVG LSIAIRYSLS RRAFSVTANG PEVLLLDYPS HQRRLLPLLA KTYAMSFAAN
401: ELKMIYVKRT PETNKAIHVV SSGFKAVLTW HNMHTLQECR EAVGGQGVKT ENLVGQLKGE FDVQTTFEGD NNVLMQQVSK ALFAEYVSCK KRNKPFKGLG
501: LEHMNSPRPV LPTQLTSSTL RCSQFQTNVF CLRERDLLEQ FTSEVAQLQG RGESREFSFL LSHQLAEDLG KAFTEKAILQ TILDAEAKLP TGSVKDVLGL
601: VRSMYALISL EEDPSLLRYG YLSQDNVGDV RREVSKLCGE LRPHALALVT SFGIPDSFLS PIAFNWVEAN AWSSV

Arabidopsis Description

ACX3Acyl-coenzyme A oxidase 3, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:P0CZ23]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.