CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

plastid 2
mitochondrion 3
peroxisome 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY55104
CDY57769

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06290.1	CDY55104	AT5G65940.1	21798944
AT1G06290.1	CDY57769	AT5G65940.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015491.1-P	Field mustard	peroxisome	100.0	100.0
CDY10192	Canola	mitochondrion	98.07	97.78
AT1G06290.1	Thale cress	mitochondrion	91.41	91.41
CDY10194	Canola	mitochondrion, peroxisome	83.85	83.98
CDY57822	Canola	peroxisome	83.41	83.41
PGSC0003DMT400027351	Potato	cytosol, extracellular	73.93	73.93
Solyc10g008110.2.1	Tomato	nucleus	74.07	73.21
KRH25680	Soybean	nucleus	71.85	71.85
VIT_12s0028g02660.t01	Wine grape	mitochondrion	73.33	71.64
KRH55840	Soybean	nucleus	71.41	71.41
PGSC0003DMT400056247	Potato	mitochondrion	29.04	68.06
GSMUA_Achr2P15230_001	Banana	peroxisome	66.81	66.42
TraesCS7B01G250400.1	Wheat	mitochondrion	66.37	65.69
TraesCS7D01G346400.2	Wheat	mitochondrion	66.37	65.69
TraesCS7A01G339100.1	Wheat	mitochondrion	66.22	65.54
HORVU7Hr1G083490.8	Barley	mitochondrion	66.22	65.45
GSMUA_Achr6P05860_001	Banana	peroxisome	66.07	65.3
Os06t0354500-01	Rice	plasma membrane	64.89	63.94
EES01747	Sorghum	plastid	64.74	63.89
Zm00001d042884_P003	Maize	extracellular	64.0	63.16
CDX81267	Canola	plastid	30.07	29.85
CDY14540	Canola	peroxisome	30.37	29.75
CDY18687	Canola	plastid	29.93	29.71
CDY08820	Canola	peroxisome	30.22	29.57
CDY59471	Canola	peroxisome	25.48	25.9
CDY42938	Canola	peroxisome	25.33	25.75
CDX84603	Canola	peroxisome	25.19	25.6
CDX79618	Canola	peroxisome	24.89	25.3

Protein Annotations

KEGG:00071+1.3.3.6	KEGG:00592+1.3.3.6	Gene3D:1.20.140.10	Gene3D:2.40.110.10	MapMan:5.7.3.2.1	GO:A0A078IZG1
UniProt:A0A078IZG1	InterPro:Acyl-CoA_Oxase/DH_cen-dom	InterPro:Acyl-CoA_oxidase	InterPro:Acyl-CoA_oxidase_C	InterPro:AcylCoA_DH/oxidase_NM_dom	InterPro:AcylCo_DH-like_C
InterPro:AcylCo_DH/oxidase_C	EnsemblPlants:CDY57818	ProteinID:CDY57818	ProteinID:CDY57818.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003997	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005777	GO:GO:0006629	GO:GO:0006631	GO:GO:0006635	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016627	GO:GO:0050660	GO:GO:0055114
GO:GO:0071949	EnsemblPlantsGene:GSBRNA2T00022730001	PFAM:PF00441	PFAM:PF01756	PFAM:PF02770	PIRSF:PIRSF000168
PANTHER:PTHR10909	PANTHER:PTHR10909:SF352	MetaCyc:PWY-5136	MetaCyc:PWY-6837	MetaCyc:PWY-6920	MetaCyc:PWY-7007
MetaCyc:PWY-7288	MetaCyc:PWY-7291	MetaCyc:PWY-7337	MetaCyc:PWY-7338	MetaCyc:PWY-7340	MetaCyc:PWY-735
MetaCyc:PWY-7606	MetaCyc:PWY-7726	SUPFAM:SSF47203	SUPFAM:SSF56645	UniParc:UPI000254513E	SEG:seg

Description

BnaA10g28060DAcyl-coenzyme A oxidase [Source:UniProtKB/TrEMBL;Acc:A0A078IZG1]

Coordinates

chrLK033608:+:26650..30299

Molecular Weight (calculated)

75718.8 Da

IEP (calculated)

8.334

GRAVY (calculated)

-0.277

Length

675 amino acids

Sequence
(BLAST)

001: MSENRALQRA HILANHILRS PPLPSSLSLA REVCLQYSPP ELNESYGFDV KEMRRLLDGH NTEDRDWLYG LMMQSNLFNR KERGGKIFVS PDYNQTMEQQ
101: REITMKRIWY LLEKGVYRGW LTDSGPEAEL KKLALLEVCG IYDHSLSIKL GVHFFLWGNA VKFFGTKRHH EKWLKNTEDY VVKGCFAMTE LGHGSNVRGI
201: ETVTTYDPRT GEFVINTPCE SAQKYWIGGA AKHATHTIVF SQLNINGTNQ GVHAFIAQIR DEDGNICPNI RVADCGHKIG LNGVDNGRIW FDNLRIPREN
301: LLNSVADVSP DGEYVSAIKD PDQRFGAFMA PLTSGRVTIA SSAIYSAKVG LAIALRYSLS RRAFSVKANG PEVLLLDYPS HQRRLLPLLA KTYAMSFAAN
401: DLKMIYVKRT PETNKAIHVV SSGLKAVLTW HNMHTLQECR EAVGGQGVKT ENLVGQLKGE FDVQTTFEGD NNVLMQQVSK ALFAEYVSCK KRNKPFRGLG
501: LEHMNSSRPV LPTQLSSSTL RCSQFQKNVF CLRERDLLER FTSEVAQLQG RGESRESSFL VNHELAEDLG KAFTEKAILQ TILDAEAKLP AGSMKDVLGL
601: VRSMYALISI EEDPSFLRYG YLSRDNVGDV RREVSKLCGE LRPHALALVS SFGIPDAFLG PIAFNWVEAN AWSSV

Best Arabidopsis Sequence Match ( AT1G06290.1 )
(BLAST)

001: MSDNRALRRA HVLANHILQS NPPSSNPSLS RELCLQYSPP ELNESYGFDV KEMRKLLDGH NVVDRDWIYG LMMQSNLFNR KERGGKIFVS PDYNQTMEQQ
101: REITMKRIWY LLENGVFKGW LTETGPEAEL RKLALLEVCG IYDHSVSIKV GVHFFLWGNA VKFFGTKRHH EKWLKNTEDY VVKGCFAMTE LGHGSNVRGI
201: ETVTTYDPKT EEFVINTPCE SAQKYWIGGA ANHATHTIVF SQLHINGTNQ GVHAFIAQIR DQDGSICPNI RIADCGHKIG LNGVDNGRIW FDNLRIPREN
301: LLNAVADVSS DGKYVSSIKD PDQRFGAFMA PLTSGRVTIA SSAIYSAKVG LSIAIRYSLS RRAFSVTANG PEVLLLDYPS HQRRLLPLLA KTYAMSFAAN
401: ELKMIYVKRT PETNKAIHVV SSGFKAVLTW HNMHTLQECR EAVGGQGVKT ENLVGQLKGE FDVQTTFEGD NNVLMQQVSK ALFAEYVSCK KRNKPFKGLG
501: LEHMNSPRPV LPTQLTSSTL RCSQFQTNVF CLRERDLLEQ FTSEVAQLQG RGESREFSFL LSHQLAEDLG KAFTEKAILQ TILDAEAKLP TGSVKDVLGL
601: VRSMYALISL EEDPSLLRYG YLSQDNVGDV RREVSKLCGE LRPHALALVT SFGIPDSFLS PIAFNWVEAN AWSSV

Arabidopsis Description

ACX3Acyl-coenzyme A oxidase 3, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:P0CZ23]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.