Factsheet for GSMUA_Achr6P05860_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

plastid 2
mitochondrion 3
peroxisome 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P13870_001
GSMUA_Achr5P13890_001
GSMUA_Achr5P13900_001
GSMUA_Achr8P14800_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06290.1	GSMUA_Achr5P13870_001	AT5G65940.1	21798944
AT1G06290.1	GSMUA_Achr5P13890_001	AT5G65940.1	21798944
AT1G06290.1	GSMUA_Achr5P13900_001	AT5G65940.1	21798944
AT1G06290.1	GSMUA_Achr8P14800_001	AT5G65940.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P15230_001	Banana	peroxisome	80.23	80.71
VIT_12s0028g02660.t01	Wine grape	mitochondrion	68.67	67.87
Os06t0354500-01	Rice	plasma membrane	67.64	67.45
KRH55840	Soybean	nucleus	66.62	67.41
HORVU7Hr1G083490.8	Barley	mitochondrion	67.2	67.2
KRH25680	Soybean	nucleus	66.33	67.11
TraesCS7A01G339100.1	Wheat	mitochondrion	66.76	66.86
TraesCS7D01G346400.2	Wheat	mitochondrion	66.62	66.72
TraesCS7B01G250400.1	Wheat	mitochondrion	66.62	66.72
PGSC0003DMT400027351	Potato	cytosol, extracellular	65.45	66.22
EES01747	Sorghum	plastid	66.18	66.08
Zm00001d042884_P003	Maize	extracellular	66.18	66.08
CDY57818	Canola	peroxisome	65.3	66.07
Bra015491.1-P	Field mustard	peroxisome	65.3	66.07
CDY10192	Canola	mitochondrion	65.01	65.58
AT1G06290.1	Thale cress	mitochondrion	64.71	65.48
Solyc10g008110.2.1	Tomato	nucleus	65.45	65.45
AT1G06310.1	Thale cress	peroxisome	64.42	65.19
CDY10194	Canola	mitochondrion, peroxisome	62.37	63.2
Bra015492.1-P	Field mustard	peroxisome	62.52	63.17
CDY57822	Canola	peroxisome	62.23	62.96
Bra015494.1-P	Field mustard	mitochondrion, peroxisome	51.39	60.94
PGSC0003DMT400056247	Potato	mitochondrion	24.74	58.68
GSMUA_Achr2P22160_001	Banana	peroxisome	29.14	28.8
GSMUA_Achr7P07440_001	Banana	peroxisome	24.89	25.53

Protein Annotations

KEGG:00071+1.3.3.6	KEGG:00592+1.3.3.6	Gene3D:1.20.140.10	Gene3D:2.40.110.10	MapMan:5.7.3.2.1	InterPro:Acyl-CoA_Oxase/DH_cen-dom
InterPro:Acyl-CoA_oxidase	InterPro:Acyl-CoA_oxidase_C	InterPro:AcylCoA_DH/oxidase_NM_dom	InterPro:AcylCo_DH-like_C	InterPro:AcylCo_DH/oxidase_C	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003997	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0006629	GO:GO:0006631	GO:GO:0006635
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016627	GO:GO:0050660
GO:GO:0055114	GO:GO:0071949	EnsemblPlantsGene:GSMUA_Achr6G05860_001	EnsemblPlants:GSMUA_Achr6P05860_001	EnsemblPlants:GSMUA_Achr6T05860_001	UniProt:M0T4I4
PFAM:PF00441	PFAM:PF01756	PFAM:PF02770	PIRSF:PIRSF000168	PANTHER:PTHR10909	PANTHER:PTHR10909:SF352
SUPFAM:SSF47203	SUPFAM:SSF56645	UniParc:UPI000295DA1A	:	:	:

Description

Acyl-coenzyme A oxidase 3, peroxisomal [Source:GMGC_GENE;Acc:GSMUA_Achr6G05860_001]

Coordinates

chr6:-:3944043..3948711

Molecular Weight (calculated)

75874.9 Da

IEP (calculated)

7.510

GRAVY (calculated)

-0.124

Length

683 amino acids

Sequence
(BLAST)

001: MDPHSSAARR TAVLAGHLLR GSAPADGLSS ALIEPAACLH YSPPELSEQP PSFDTASLRR VLDGHDTEGR DWLFRLMEES SLFCPRRRGN RTFVAPDYNQ
101: TMEQQRAVTM RRIEYLLANG VFEGWLTGSG PEALMRKFAF FECIGIFDHS LAIKLGVHFF LWGGAVQIFG TKHHHDKWLK AAENYQVQGC FVMTELGHGS
201: NVRGLETIAT YDANAGEFVI NTPCESAQKY WIGGAANDAT HAVIFSQLLI NGTNQGVHVF IAQIRDAEGN VCPNVRVADC GHKIGLNGVD NGRIWFDNFR
301: VPRENLLNSV ADVLPDGRYV SPIKDPDQRF AALLAPLSSG RVNIAALAVC ISKVGLSIAV RYALTRRAFS ISASVPEVLL LDYPSHQRRL LPLIAKTCAM
401: SSTTNFLKRL FTKRTRESNK SIHIYCSAFK ATLSWHTMRV LQECREACGG QGLKTENRVG ILKGEYDVQS TFEGDNNVLM QQVSKALLAE YIAAHKRKSP
501: FKGLGLEHMN DPCPIIPSNL NSCTLRSSKF QLDLFCLRER DLFGRYANEV SQYQAQGETK EKAVLLSYQL AGDLARAFAE RSILQIFIDD EMAQPAGPLK
601: DILGLLRSMY ALICTEEDAS FLRYGYLSLD NAAVARKEVM KLCYELRPHA LSVVSSFGIP DAFLSPIAFD WIQANSWSSL NEE

Best Arabidopsis Sequence Match ( AT1G06290.1 )
(BLAST)

001: MSDNRALRRA HVLANHILQS NPPSSNPSLS RELCLQYSPP ELNESYGFDV KEMRKLLDGH NVVDRDWIYG LMMQSNLFNR KERGGKIFVS PDYNQTMEQQ
101: REITMKRIWY LLENGVFKGW LTETGPEAEL RKLALLEVCG IYDHSVSIKV GVHFFLWGNA VKFFGTKRHH EKWLKNTEDY VVKGCFAMTE LGHGSNVRGI
201: ETVTTYDPKT EEFVINTPCE SAQKYWIGGA ANHATHTIVF SQLHINGTNQ GVHAFIAQIR DQDGSICPNI RIADCGHKIG LNGVDNGRIW FDNLRIPREN
301: LLNAVADVSS DGKYVSSIKD PDQRFGAFMA PLTSGRVTIA SSAIYSAKVG LSIAIRYSLS RRAFSVTANG PEVLLLDYPS HQRRLLPLLA KTYAMSFAAN
401: ELKMIYVKRT PETNKAIHVV SSGFKAVLTW HNMHTLQECR EAVGGQGVKT ENLVGQLKGE FDVQTTFEGD NNVLMQQVSK ALFAEYVSCK KRNKPFKGLG
501: LEHMNSPRPV LPTQLTSSTL RCSQFQTNVF CLRERDLLEQ FTSEVAQLQG RGESREFSFL LSHQLAEDLG KAFTEKAILQ TILDAEAKLP TGSVKDVLGL
601: VRSMYALISL EEDPSLLRYG YLSQDNVGDV RREVSKLCGE LRPHALALVT SFGIPDSFLS PIAFNWVEAN AWSSV

Arabidopsis Description

ACX3Acyl-coenzyme A oxidase 3, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:P0CZ23]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.