Factsheet for Os06t0354500-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
mitochondrion 4
peroxisome 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os12t0264500-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06290.1	Os12t0264500-02	AT5G65940.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G083490.8	Barley	mitochondrion	86.86	87.12
TraesCS7B01G250400.1	Wheat	mitochondrion	86.72	87.1
TraesCS7D01G346400.2	Wheat	mitochondrion	86.28	86.66
TraesCS7A01G339100.1	Wheat	mitochondrion	86.28	86.66
Zm00001d042884_P003	Maize	extracellular	82.04	82.16
EES01747	Sorghum	plastid	81.31	81.43
GSMUA_Achr2P15230_001	Banana	peroxisome	70.36	70.99
GSMUA_Achr6P05860_001	Banana	peroxisome	67.45	67.64
KRH55840	Soybean	nucleus	66.42	67.41
PGSC0003DMT400027351	Potato	cytosol, extracellular	65.99	66.96
KRH25680	Soybean	nucleus	65.69	66.67
VIT_12s0028g02660.t01	Wine grape	mitochondrion	67.01	66.43
Solyc10g008110.2.1	Tomato	nucleus	65.99	66.18
AT1G06290.1	Thale cress	mitochondrion	64.67	65.63
CDY57818	Canola	peroxisome	63.94	64.89
Bra015491.1-P	Field mustard	peroxisome	63.94	64.89
CDY10192	Canola	mitochondrion	63.8	64.55
PGSC0003DMT400056247	Potato	mitochondrion	27.01	64.24
AT1G06310.1	Thale cress	peroxisome	62.92	63.85
CDY10194	Canola	mitochondrion, peroxisome	62.48	63.5
CDY57822	Canola	peroxisome	62.48	63.41
Bra015494.1-P	Field mustard	mitochondrion, peroxisome	52.41	62.33
Bra015492.1-P	Field mustard	peroxisome	61.02	61.83
Os11t0605500-01	Rice	peroxisome	29.93	29.33
Os06t0103500-01	Rice	peroxisome	24.38	24.96

Protein Annotations

KEGG:00071+1.3.3.6	KEGG:00592+1.3.3.6	Gene3D:1.20.140.10	Gene3D:2.40.110.10	EntrezGene:4340986	MapMan:5.7.3.2.1
EMBL:AK066934	InterPro:Acyl-CoA_Oxase/DH_cen-dom	InterPro:Acyl-CoA_oxidase	InterPro:Acyl-CoA_oxidase_C	InterPro:AcylCoA_DH/oxidase_NM_dom	InterPro:AcylCo_DH-like_C
InterPro:AcylCo_DH/oxidase_C	ProteinID:BAD35410.1	ProteinID:BAF19505.1	ProteinID:BAS97681.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003995	GO:GO:0003997	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0006629	GO:GO:0006631	GO:GO:0006635
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016627	GO:GO:0033539
GO:GO:0050660	GO:GO:0055114	GO:GO:0071949	EnsemblPlantsGene:Os06g0354500	EnsemblPlants:Os06t0354500-01	PFAM:PF00441
PFAM:PF01756	PFAM:PF02770	PIRSF:PIRSF000168	PANTHER:PTHR10909	PANTHER:PTHR10909:SF352	UniProt:Q69XR7
SUPFAM:SSF47203	SUPFAM:SSF56645	UniParc:UPI00004037AF	RefSeq:XP_015644122.1	SEG:seg	:

Description

Similar to Acyl-coenzyme A oxidase 3, peroxisomal precursor (EC 1.3.3.6) (AOX 3) (Medium-chain acyl-CoA oxidase) (AtCX3). (Os06t0354500-01)

Coordinates

chr6:-:14504152..14512950

Molecular Weight (calculated)

76283.6 Da

IEP (calculated)

7.840

GRAVY (calculated)

-0.187

Length

685 amino acids

Sequence
(BLAST)

001: MDPSYPPSAT ARRAAAIARH LAGLSPRDAA AVAAALEPSA CLSYAPPESS EPAPAFSPLE LRSLLDGHHL RERDWAFRAM EESPLFCQRR SGGKVFVSPD
101: YNEGKEGQRE ATMRRVGYLA RRGVFRGWLT EPGPDAELRK LALLECLGMY DHSLAIKIGV HFFLWGSAIK FLGTKRHHDK WLSDTENYVI KGCFSMTELG
201: HGSNVRGIET VATYDIKTRE FVINTPCESA QKYWIGGAAN HATHTIVFAQ LHINGRNEGV HAFVAQIRDE HENVMPNIQI ADCGHKIGLN GVDNGRIWFN
301: NIRVPRENLL NLVADVLPDG QYVSTIDDPD QRFAAFLSPL TLGRVNIAVN AVYISKVGVA IAVRYALSRR AFSVTPDGPE MLLLDYPSHQ RRLLPLLAKA
401: CLMSSAGNFM KRMYVKRTPE LNKSIHIYSS ALKATLTWQN MTTLQECREA CGGQGLKTEN RIGIFKAEFD VQSTFEGDNN VLMQQVSKAL YAEFLTAKRK
501: NQPFKGLGLE HLNGPCPVIP DYLTSGTLRS SSFQMDLLCL RERDLLKRFT TEVSNYLAQG ENREKALMLS YQLAEDLARA FTERTILQIF LEDEKNIPTG
601: SLKDILGLLR SLYVMVCIDE SASFLRYGCL SRENVAAARK EVMTLCSELR PHALAIVSSF GIPDAFLSPL AFDWIEANAR SSGNE

Best Arabidopsis Sequence Match ( AT1G06290.1 )
(BLAST)

001: MSDNRALRRA HVLANHILQS NPPSSNPSLS RELCLQYSPP ELNESYGFDV KEMRKLLDGH NVVDRDWIYG LMMQSNLFNR KERGGKIFVS PDYNQTMEQQ
101: REITMKRIWY LLENGVFKGW LTETGPEAEL RKLALLEVCG IYDHSVSIKV GVHFFLWGNA VKFFGTKRHH EKWLKNTEDY VVKGCFAMTE LGHGSNVRGI
201: ETVTTYDPKT EEFVINTPCE SAQKYWIGGA ANHATHTIVF SQLHINGTNQ GVHAFIAQIR DQDGSICPNI RIADCGHKIG LNGVDNGRIW FDNLRIPREN
301: LLNAVADVSS DGKYVSSIKD PDQRFGAFMA PLTSGRVTIA SSAIYSAKVG LSIAIRYSLS RRAFSVTANG PEVLLLDYPS HQRRLLPLLA KTYAMSFAAN
401: ELKMIYVKRT PETNKAIHVV SSGFKAVLTW HNMHTLQECR EAVGGQGVKT ENLVGQLKGE FDVQTTFEGD NNVLMQQVSK ALFAEYVSCK KRNKPFKGLG
501: LEHMNSPRPV LPTQLTSSTL RCSQFQTNVF CLRERDLLEQ FTSEVAQLQG RGESREFSFL LSHQLAEDLG KAFTEKAILQ TILDAEAKLP TGSVKDVLGL
601: VRSMYALISL EEDPSLLRYG YLSQDNVGDV RREVSKLCGE LRPHALALVT SFGIPDSFLS PIAFNWVEAN AWSSV

Arabidopsis Description

ACX3Acyl-coenzyme A oxidase 3, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:P0CZ23]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.