CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 1
peroxisome 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79176
CDX79848
CDX79851
CDX81675
CDX84001
CDX88580
CDX91876
CDX93710
CDX99958
CDY01102
CDY03977
CDY07174
CDY07887
CDY08455
CDY11911
CDY14839
CDY15651
CDY20715
CDY22564
CDY32769
CDY32873
CDY33737
CDY35376
CDY41800
CDY47975
CDY48504
CDY50821
CDY52026
CDY65216
CDY67475
CDY68743
CDY72240

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65940.1	CDX81675	AT1G14830.1	21798944
AT5G65940.1	CDX84001	AT1G14830.1	21798944
AT5G65940.1	CDY33737	AT1G14830.1	21798944
AT5G65940.1	CDY52026	AT1G14830.1	21798944
AT5G65940.1	CDY14839	AT2G42490.1	21798944
AT5G65940.1	CDY22564	AT2G42490.1	21798944
AT5G65940.1	CDY35376	AT2G42490.1	21798944
AT5G65940.1	CDY47975	AT2G42490.1	21798944
AT5G65940.1	CDX79848	AT2G42790.1	21798944
AT5G65940.1	CDX79851	AT2G42790.1	21798944
AT5G65940.1	CDY15651	AT2G42790.1	21798944
AT5G65940.1	CDY50821	AT2G42790.1	21798944
AT5G65940.1	CDY01102	AT3G12110.1	21798944
AT5G65940.1	CDY08455	AT3G12110.1	21798944
AT5G65940.1	CDX79176	AT4G01090.1	21798944
AT5G65940.1	CDX91876	AT4G01090.1	21798944
AT5G65940.1	CDY07174	AT4G01090.1	21798944
AT5G65940.1	CDY48504	AT4G01090.1	21798944
AT5G65940.1	CDY67475	AT4G01090.1	21798944
AT5G65940.1	CDX88580	AT5G56630.1	21798944
AT5G65940.1	CDX93710	AT5G56630.1	21798944
AT5G65940.1	CDX99958	AT5G56630.1	21798944
AT5G65940.1	CDY03977	AT5G56630.1	21798944
AT5G65940.1	CDY07887	AT5G56630.1	21798944
AT5G65940.1	CDY11911	AT5G56630.1	21798944
AT5G65940.1	CDY20715	AT5G56630.1	21798944
AT5G65940.1	CDY32769	AT5G56630.1	21798944
AT5G65940.1	CDY32873	AT5G56630.1	21798944
AT5G65940.1	CDY41800	AT5G56630.1	21798944
AT5G65940.1	CDY65216	AT5G56630.1	21798944
AT5G65940.1	CDY68743	AT5G56630.1	21798944
AT5G65940.1	CDY72240	AT5G56630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031802.1-P	Field mustard	cytosol	100.0	100.0
CDY57769	Canola	peroxisome	97.34	98.12
AT5G65940.1	Thale cress	peroxisome	85.9	85.45
CDY31775	Canola	peroxisome	80.59	79.11
CDX97894	Canola	peroxisome	80.85	78.35
CDY62818	Canola	peroxisome	81.91	76.81
CDY31769	Canola	peroxisome	81.91	76.81
CDY45442	Canola	mitochondrion	63.03	71.6
VIT_09s0002g07160.t01	Wine grape	mitochondrion, peroxisome, plastid	69.95	71.08
CDY45439	Canola	plastid	73.67	70.13
Solyc01g080930.2.1	Tomato	cytosol	70.21	68.93
CDY71268	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	27.13	68.46
PGSC0003DMT400066411	Potato	nucleus	25.8	66.44
PGSC0003DMT400004567	Potato	extracellular	22.87	65.15
KRH07311	Soybean	nucleus	67.02	65.12
Solyc01g108800.2.1	Tomato	cytoskeleton, cytosol, peroxisome	65.43	64.91
Solyc01g094090.2.1	Tomato	cytosol	55.59	63.53
EER91893	Sorghum	cytosol	64.89	63.21
PGSC0003DMT400000054	Potato	cytosol	64.36	63.02
TraesCS1B01G206000.1	Wheat	cytosol	62.23	61.42
TraesCS1D01G194800.2	Wheat	cytosol	62.23	61.42
PGSC0003DMT400066414	Potato	cytosol	27.93	61.4
GSMUA_Achr5P13900_001	Banana	cytosol	50.8	61.22
PGSC0003DMT400000043	Potato	cytosol, mitochondrion, peroxisome	42.82	60.53
PGSC0003DMT400066409	Potato	cytosol	22.34	60.43
PGSC0003DMT400066419	Potato	cytosol	38.56	60.42
PGSC0003DMT400066424	Potato	cytosol, nucleus, plastid	10.9	60.29
Zm00001d021132_P004	Maize	extracellular	64.63	60.15
Zm00001d007726_P001	Maize	peroxisome	39.1	60.0
Zm00001d007746_P002	Maize	peroxisome	30.05	59.47
TraesCS1A01G190800.1	Wheat	plastid	61.97	59.44
GSMUA_Achr5P13870_001	Banana	cytosol	62.23	59.24
PGSC0003DMT400004521	Potato	cytosol	36.7	58.97
Zm00001d023779_P001	Maize	extracellular	60.11	58.55
GSMUA_Achr8P14800_001	Banana	cytosol	60.9	57.68
PGSC0003DMT400004585	Potato	extracellular	40.43	56.93
KXG29172	Sorghum	peroxisome	58.51	56.85
OQU84058	Sorghum	mitochondrion	61.17	56.1
HORVU1Hr1G049960.6	Barley	mitochondrion	61.97	55.21
VIT_15s0045g01190.t01	Wine grape	cytosol, nucleus, peroxisome	52.39	50.38
Zm00001d007740_P001	Maize	peroxisome	50.27	50.13
Zm00001d007732_P002	Maize	extracellular	36.7	48.42
Os12t0264500-02	Rice	endoplasmic reticulum	63.03	46.2
Zm00001d007728_P001	Maize	cytosol	17.29	45.77
CDX67831	Canola	mitochondrion	46.28	43.28
CDX98420	Canola	mitochondrion	46.28	43.28
GSMUA_Achr5P13890_001	Banana	nucleus	18.35	43.12
CDX86518	Canola	cytosol	41.76	40.99
CDY72221	Canola	mitochondrion	22.34	40.38
CDY15584	Canola	cytosol	40.69	40.37
CDY23311	Canola	mitochondrion	43.62	40.0
CDY39880	Canola	mitochondrion	43.35	39.76
CDY49269	Canola	extracellular, mitochondrion, nucleus, plastid	23.14	38.67
Solyc01g108790.1.1	Tomato	nucleus	17.55	37.5
CDY15581	Canola	cytosol	27.13	37.36
CDY15583	Canola	cytosol	35.64	36.31
CDY64934	Canola	cytosol	36.17	35.7
CDY01126	Canola	mitochondrion, plastid	36.17	32.23
CDX86519	Canola	extracellular	16.76	31.82
CDX94817	Canola	mitochondrion, plastid	35.64	31.68
CDX93011	Canola	plastid	35.37	31.44

Protein Annotations

EnsemblPlants:CDY55104	EnsemblPlantsGene:GSBRNA2T00016406001	Gene3D:3.90.226.40	GO:A0A078IXV9	GO:GO:0003674	GO:GO:0003824
GO:GO:0003860	GO:GO:0016787	InterPro:ClpP/crotonase-like_dom_sf	InterPro:HIBYL-CoA-H	PANTHER:PTHR43176	PFAM:PF16113
ProteinID:CDY55104	ProteinID:CDY55104.1	SUPFAM:SSF52096	UniParc:UPI0002546CBB	UniProt:A0A078IXV9	MapMan:4.2.7.4
MapMan:4.2.7.6.1	:	:	:	:	:

Description

BnaA02g34880DBnaA02g34880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IXV9]

Coordinates

chrLK033375:+:50242..53487

Molecular Weight (calculated)

41783.6 Da

IEP (calculated)

7.790

GRAVY (calculated)

-0.102

Length

376 amino acids

Sequence
(BLAST)

001: MASHSQVLVE EKSSVRILTL NRPKQLNALS FQMISRLLQL FLAYEEDPSV KLVILKGQGR AFCAGGDVSA VVRDIGQGNW RLGAKFFADE YMLNYVMATY
101: TKPQVSILNG IVMGGGAGVS VHGPFRIATE NTVFAMPETV LGLFPDVGAS YFLSRLPGFF GEYVGLTGAR LDGADMLACG LATHYLPSTR LTALEAELCR
201: VDSSDPALVS TILDAYTQNP HLKQQSAYHR QVLDVIDRCF SGRTVEEIIA ALEREATHGG DDWISSTIRA LKKASPASLK ISLRSIREGR LQGVGQCLSR
301: EYRMVCHVLK GDISKDFVEG CRAILIDKDK NPKWEPWRLE EMKDRMVEQY FKRVEEEEDL KFPARKNLPA LAMAKL

Best Arabidopsis Sequence Match ( AT5G65940.4 )
(BLAST)

001: MAVEMASQSQ VLVEEKSSVR ILTLNRPKQL NALSFHMISR LLQLFLAFEE DPSVKLVILK GHGRAFCAGG DVAAVVRDIN QGNWRLGANY FSSEYMLNYV
101: MATYSKAQVS ILNGIVMGGG AGVSVHGRFR IATENTVFAM PETALGLFPD VGASYFLSRL PGFFGEYVGL TGARLDGAEM LACGLATHFV PSTRLTALEA
201: DLCRINSNDP TFASTILDAY TQHPRLKQQS AYRRLDVIDR CFSRRTVEEI ISALEREATQ EADGWISATI QALKKGSPAS LKISLRSIRE GRLQGVGQCL
301: IREYRMVCHV MKGEISKDFV EGCRAILVDK DKNPKWEPRR LEDMKDSMVE QYFERVERED DLKLPPRNNL PALGIAKL

Arabidopsis Description

CHY13-hydroxyisobutyryl-CoA hydrolase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKJ1]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.