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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • peroxisome 3
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, peroxisome
MultiLoc:peroxisome
PProwler:peroxisome
WoLF PSORT:peroxisome
YLoc:cytosol
 extracellular: 20408568
msms PMID: 20408568 doi
W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li
Department of Plant Nutrition, China Agricultural University, Beijing, PR China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d003309_P002
Zm00001d009716_P001
Zm00001d011373_P002
Zm00001d013426_P002
Zm00001d016081_P002
Zm00001d016248_P001
Zm00001d033751_P003
Zm00001d038775_P002
Zm00001d043563_P002
Zm00001d044191_P004
Zm00001d046072_P001
Zm00001d053382_P002

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G65940.1 Zm00001d013426_P002 AT1G14830.1 21798944
AT5G65940.1 Zm00001d033751_P003 AT1G14830.1 21798944
AT5G65940.1 Zm00001d003309_P002 AT2G42490.1 21798944
AT5G65940.1 Zm00001d016248_P001 AT2G42790.1 21798944
AT5G65940.1 Zm00001d009716_P001 AT4G01090.1 21798944
AT5G65940.1 Zm00001d011373_P002 AT4G01090.1 21798944
AT5G65940.1 Zm00001d016081_P002 AT4G01090.1 21798944
AT5G65940.1 Zm00001d044191_P004 AT4G01090.1 21798944
AT5G65940.1 Zm00001d046072_P001 AT4G01090.1 21798944
AT5G65940.1 Zm00001d053382_P002 AT4G01090.1 21798944
AT5G65940.1 Zm00001d038775_P002 AT5G56630.1 21798944
AT5G65940.1 Zm00001d043563_P002 AT5G56630.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER91893 Sorghum cytosol 91.58 95.85
Zm00001d007726_P001 Maize peroxisome 49.51 81.63
Zm00001d007746_P002 Maize peroxisome 37.38 79.47
TraesCS1B01G206000.1 Wheat cytosol 74.75 79.27
TraesCS1D01G194800.2 Wheat cytosol 74.5 79.0
TraesCS1A01G190800.1 Wheat plastid 75.25 77.55
Zm00001d023779_P001 Maize extracellular 73.51 76.94
HORVU1Hr1G049960.6 Barley mitochondrion 74.5 71.33
Zm00001d007740_P001 Maize peroxisome 62.62 67.11
CDY57769 Canola peroxisome 60.89 65.95
GSMUA_Achr5P13900_001 Banana cytosol 50.74 65.71
VIT_09s0002g07160.t01 Wine grape mitochondrion, peroxisome, plastid 59.41 64.86
CDY55104 Canola cytosol 60.15 64.63
Bra031802.1-P Field mustard cytosol 60.15 64.63
PGSC0003DMT400004567 Potato extracellular 21.04 64.39
VIT_15s0045g01170.t01 Wine grape cytosol 23.27 64.38
AT5G65940.1 Thale cress peroxisome 59.9 64.02
Solyc01g080930.2.1 Tomato cytosol 60.64 63.97
AT2G30660.1 Thale cress peroxisome 59.41 63.49
KRH07311 Soybean nucleus 60.4 63.05
GSMUA_Achr5P13870_001 Banana cytosol 61.63 63.04
GSMUA_Achr8P14800_001 Banana cytosol 61.88 62.97
PGSC0003DMT400066411 Potato nucleus 22.52 62.33
AT2G30650.1 Thale cress peroxisome 58.17 62.17
Solyc01g108800.2.1 Tomato cytoskeleton, cytosol, peroxisome 57.92 61.74
PGSC0003DMT400066414 Potato cytosol 25.99 61.4
Os12t0264500-02 Rice endoplasmic reticulum 77.72 61.21
CDY71268 Canola cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole 22.52 61.07
CDY31775 Canola peroxisome 57.67 60.84
PGSC0003DMT400066409 Potato cytosol 20.79 60.43
Solyc01g094090.2.1 Tomato cytosol 48.76 59.88
CDX97894 Canola peroxisome 57.18 59.54
Bra018392.1-P Field mustard cytosol 54.7 59.41
PGSC0003DMT400000043 Potato cytosol, mitochondrion, peroxisome 39.11 59.4
Zm00001d007732_P002 Maize extracellular 41.83 59.3
PGSC0003DMT400066424 Potato cytosol, nucleus, plastid 9.9 58.82
PGSC0003DMT400000054 Potato cytosol 55.69 58.59
CDY62818 Canola peroxisome 57.43 57.86
CDY45442 Canola mitochondrion 47.28 57.7
Bra039968.1-P Field mustard peroxisome 56.68 57.39
Bra018395.1-P Field mustard cytosol 52.97 57.37
CDY31769 Canola peroxisome 56.93 57.36
Bra039975.1-P Field mustard peroxisome 54.46 57.14
Zm00001d007728_P001 Maize cytosol 19.8 56.34
PGSC0003DMT400004521 Potato cytosol 32.43 55.98
PGSC0003DMT400004585 Potato extracellular 36.39 55.06
CDY45439 Canola plastid 53.47 54.68
PGSC0003DMT400066419 Potato cytosol 31.93 53.75
VIT_15s0045g01190.t01 Wine grape cytosol, nucleus, peroxisome 47.28 48.85
GSMUA_Achr5P13890_001 Banana nucleus 16.83 42.5
Zm00001d029860_P001 Maize plasma membrane 42.57 42.36
Zm00001d043490_P001 Maize cytosol, extracellular 37.87 39.84
Solyc01g108790.1.1 Tomato nucleus 16.34 37.5
Zm00001d046456_P009 Maize plastid 28.71 25.95
Protein Annotations
EnsemblPlants:Zm00001d021132_P004EnsemblPlants:Zm00001d021132_T004EnsemblPlantsGene:Zm00001d021132Gene3D:3.90.226.40GO:GO:0003674GO:GO:0003824
GO:GO:0003860GO:GO:0016787InterPro:ClpP/crotonase-like_dom_sfInterPro:HIBYL-CoA-HPANTHER:PTHR43176PFAM:PF16113
ProteinID:ONM56344.1SEG:segSUPFAM:SSF52096UniParc:UPI0008446E9FUniProt:A0A1D6I8H1MapMan:4.2.7.4
MapMan:4.2.7.6.1:::::
Description
3-hydroxyisobutyryl-CoA hydrolase 1
Coordinates
chr7:-:143453893..143458551
Molecular Weight (calculated)
44599.6 Da
IEP (calculated)
7.358
GRAVY (calculated)
-0.130
Length
404 amino acids
Sequence
(BLAST)
001: MTSMSPPSAA GDDSDQILVE VNGFTRTLIL NRPKQLNALS STMIMGLLRC FTAYEKDDGV KLLIMKGKGR AFCAGGDVAA VVRSIHKDSW KYGADFFRNE
101: FLLNYIIATY TKPQVSLLSG IVMGGGAGVS LHGRFRVATD NTVFAMPETA LGLFPDIGAS YFLSRLPGFY GEYVGLAGAR LDGGEMLACG LATHFVQSNV
201: GCVCASLITP SKYSVPQSLL SLEESLKKVD TSNAFAVCGI IDQFAQQPSL KESSSLNRLE IINKCFSKRT VEEIISALEV EASNSADEWV ATTIQSLKKA
301: SPTSLKISLR SIREGRTQTV GECLQREYRM VCHVMRGDFS RDFFEGCRAI LLDKDRNPKW MPPRLEQVHD EAVEQYFSRI DDPQWEDLNL PARRSHGRNI
401: ESKL
Best Arabidopsis Sequence Match ( AT5G65940.4 )
(BLAST)
001: MAVEMASQSQ VLVEEKSSVR ILTLNRPKQL NALSFHMISR LLQLFLAFEE DPSVKLVILK GHGRAFCAGG DVAAVVRDIN QGNWRLGANY FSSEYMLNYV
101: MATYSKAQVS ILNGIVMGGG AGVSVHGRFR IATENTVFAM PETALGLFPD VGASYFLSRL PGFFGEYVGL TGARLDGAEM LACGLATHFV PSTRLTALEA
201: DLCRINSNDP TFASTILDAY TQHPRLKQQS AYRRLDVIDR CFSRRTVEEI ISALEREATQ EADGWISATI QALKKGSPAS LKISLRSIRE GRLQGVGQCL
301: IREYRMVCHV MKGEISKDFV EGCRAILVDK DKNPKWEPRR LEDMKDSMVE QYFERVERED DLKLPPRNNL PALGIAKL
Arabidopsis Description
CHY13-hydroxyisobutyryl-CoA hydrolase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKJ1]
SUBAcon: [peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.