Factsheet for Zm00001d003309_P002

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, mitochondrion

Predictor Summary:

mitochondrion 1
peroxisome 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, peroxisome
Any Predictor:	mitochondrion, peroxisome
iPSORT:	mitochondrion
MultiLoc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	peroxisome
YLoc:	peroxisome

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003309_P002
Zm00001d030021_P001
Zm00001d047053_P004
Zm00001d050302_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42490.1	Zm00001d050302_P001	AT1G13520.1	21798944
AT2G42490.1	Zm00001d003309_P002	AT2G42490.1	21798944
AT2G42490.1	Zm00001d030021_P001	AT5G46570.1	21798944
AT2G42490.1	Zm00001d047053_P004	AT5G46570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12364	Sorghum	peroxisome	98.72	98.47
Os04t0476100-01	Rice	peroxisome	64.1	96.53
TraesCS2D01G335300.1	Wheat	peroxisome, unclear	90.77	91.35
TraesCS2B01G354400.1	Wheat	peroxisome	90.64	91.34
TraesCS2A01G327600.1	Wheat	golgi	90.26	91.31
GSMUA_Achr6P06650_001	Banana	peroxisome	78.21	87.39
HORVU2Hr1G082420.6	Barley	cytosol	65.26	86.13
GSMUA_Achr10P...	Banana	peroxisome	77.95	85.75
KRH69629	Soybean	peroxisome	78.46	80.53
KRG99420	Soybean	plastid	78.46	80.1
KRH45608	Soybean	mitochondrion	78.46	79.9
VIT_00s0225g00090.t01	Wine grape	peroxisome	78.85	79.46
VIT_17s0000g09100.t01	Wine grape	peroxisome	79.36	78.26
Solyc05g013440.2.1	Tomato	peroxisome, plastid	77.69	78.09
CDY47975	Canola	peroxisome	77.44	77.94
CDY14839	Canola	peroxisome, plastid	77.44	77.94
AT2G42490.1	Thale cress	peroxisome	77.44	77.84
Bra016871.1-P	Field mustard	plastid	77.05	76.37
KRH54329	Soybean	plastid	75.77	76.36
PGSC0003DMT400059626	Potato	peroxisome	76.67	76.08
Solyc06g071700.1.1	Tomato	plastid	75.26	75.84
Solyc08g014330.2.1	Tomato	peroxisome, plastid	76.41	75.63
GSMUA_Achr6P12170_001	Banana	peroxisome	77.56	75.34
PGSC0003DMT400069411	Potato	plastid	64.87	73.33
KRH74530	Soybean	cytosol	22.56	57.7
CDY35376	Canola	plastid	76.79	56.24
CDY22564	Canola	peroxisome, plastid	76.92	55.81
KRH03234	Soybean	nucleus	72.44	43.2
Zm00001d006638_P001	Maize	mitochondrion	25.0	27.54
Zm00001d025103_P001	Maize	extracellular, golgi, vacuole	24.74	25.94

Protein Annotations

KEGG:00260+1.4.3.21	KEGG:00350+1.4.3.21	KEGG:00360+1.4.3.21	KEGG:00410+1.4.3.21	KEGG:00950+1.4.3.21	KEGG:00960+1.4.3.21
EntrezGene:100383438	Gene3D:2.70.98.20	Gene3D:3.10.450.40	MapMan:50.1.4	UniProt:A0A096SGQ3	InterPro:Cu_amine_oxidase
InterPro:Cu_amine_oxidase_C	InterPro:Cu_amine_oxidase_C_sf	InterPro:Cu_amine_oxidase_N-reg	InterPro:Cu_amine_oxidase_N3	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005777	GO:GO:0007275	GO:GO:0008131	GO:GO:0008150	GO:GO:0008152	GO:GO:0009308
GO:GO:0009653	GO:GO:0009791	GO:GO:0010311	GO:GO:0016491	GO:GO:0046872	GO:GO:0048038
GO:GO:0055114	InterPro:IPR036460	ProteinID:ONM16719.1	PFAM:PF01179	PFAM:PF02728	PANTHER:PTHR10638
PANTHER:PTHR10638:SF18	SUPFAM:SSF49998	SUPFAM:SSF54416	UniParc:UPI00022175C2	EnsemblPlantsGene:Zm00001d003309	EnsemblPlants:Zm00001d003309_P002
EnsemblPlants:Zm00001d003309_T002	SEG:seg	:	:	:	:

Description

Copper amine oxidase family protein

Coordinates

chr2:+:39693129..39700373

Molecular Weight (calculated)

86439.3 Da

IEP (calculated)

7.244

GRAVY (calculated)

-0.284

Length

780 amino acids

Sequence
(BLAST)

001: MAAAKEKASV CCRDAPARVA GAPVVPMRAI AASPVGKVVA LAAGGGERVS ASAAGSSGAV IEEIAAVQPT TAKASSKGIP IMTRAQRCHP LDPLSAAEIA
101: VAVATVRVAG RSPEERDSMR FVEAVLLEPE KNVVALADAY FFPPFQPSLL PRSKGSAVIP SRLPPRRARL VVYNKQSNET SIWIVELSEV HAATRGGHHR
201: GKVISSEVIP DVQPAMDAME YAECEATVKS YPPFIEAMKR RGVDDMDLVM VDAWCAGYYS EADAPSRRLG KPLIFCRTES DSPMENGYAR PVEGIHVVVD
301: MQNNAVIEFE DRKLVPLPPP DHLRNYTPGE TRGGVDRSDV KPLIINQPEG PSFRINGYFV EWQKWNFRIG FTPKEGLVIY SVAYVDGSRG RRPIAHRLSF
401: VEMVVPYGDP SEPHYRKNAF DAGEDGLGKN AHSLKKGCDC LGYIKYFDAH FTNFTGGVET IENCVCLHEE DHGILWKHQD WRTGLAEVRR SRRLTVSFIC
501: TVANYEYGFY WHFYQDGKIE AEVKLTGILS LGALMPGESR KYGTTIAPGL YAPVHQHFFV ARMDMAVDCK PNEAHNQVVE VNVKVESAGT HNVHNNAFYA
601: EEKLLKSELQ AMRDCDPSSA RHWIVRNTRT VNRTGQPTGY RLVPGSNCLP LALPEAKFLR RAGFLKHNLW VTQYKRGEMF PGGEFPNQNP RIHEGLPTWV
701: KNDRPLEETD IVLWYVFGLT HIPRLEDWPV MPVEHIGFML MPHGFFNCSP AVDVPPSSSD ADVKEAESPK AIQNSLISKL

Best Arabidopsis Sequence Match ( AT2G42490.1 )
(BLAST)

001: MASASKKTSA CPHHGGSLPP PKLVSAAPDT VAVWSDADDQ RASKVSLESV IRPVDSFPDN TAKKPANKGI SVMPRTETKH PLDPLSAAEI SVAVATVRAA
101: GANPEVRDGM RFIEVASVEP DKQVVALADA YFFPPFQPSL LPRTKSGPVI PMKLPPRRAR LVVYNQKSNE TSVWIVALSE VHAVTRGGHH RGRVVSSQVI
201: PDVQPPMDAA EYAECEAIVK DFPPFIEAMK RRGIEDMDLV MVDPWCVGYH SEADAPSRRL AKPLIYCRTD SDSPMENGYA RPVEGIYVLV DMQNMVVIEF
301: EDRKFVPLPP PDPLRNYTPG ESRGGVDRSD VKPLQIIQPE GPSFRVRGYF VEWQKWNFRI GFTPREGLVI HSVAYVDGSR GRRPVAHRLS FVEMVVPYGD
401: PNEPHYRKNA FDAGEDGLGK NAHSLKKGCD CLGSIKYFDA HFTNFTGGVE TIENCVCLHE EDHGILWKHQ DWRTGLAEVR RSRRLTVSFL CTVANYEYGF
501: YWHFYQDGKI EAEVKLTGIL SLGALQPGET RKYGTTIAPG LYAPVHQHFF IARMDMSVDC KPAEAFNQVV EVNVRVDERG ENNVHNNAFY AEEKLLKSEA
601: VAMRDCDPLS ARHWIVRNTR TVNRTGQLTG YKLVPGSNCL PLARPEAKFL RRAAFLKHNL WVTRYAPDEK FPGGEFPNQN PRAGEGLATW VKQNRSLEES
701: DVVLWYVFGI THVPRLEDWP VMPVEHIGFT LMPHGFFNCS PAVDVPPNPC ELETKESEVK EVVAPKALQT GLLSKL

Arabidopsis Description

Amine oxidase [Source:UniProtKB/TrEMBL;Acc:Q8L866]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.