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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, unclear

Predictor Summary:
  • mitochondrion 1
  • peroxisome 4
Predictors GFP MS/MS Papers
Winner Takes All:peroxisome, unclear
Any Predictor:mitochondrion, peroxisome
iPSORT:mitochondrion
MultiLoc:peroxisome
PProwler:peroxisome
WoLF PSORT:peroxisome
YLoc:peroxisome
 unclear: 25769308
msms PMID: 25769308 doi
AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G190200.2
TraesCS1B01G192300.3
TraesCS1D01G194300.1
TraesCS2A01G327600.1
TraesCS2B01G354400.1
TraesCS2D01G335300.1
TraesCS4A01G113900.1
TraesCS4B01G190200.1
TraesCS4D01G191600.1
TraesCS6A01G207600.3
TraesCS6B01G236300.4
TraesCS6D01G191300.1
TraesCS7D01G441700.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G42490.1 TraesCS4A01G113900.1 AT1G13520.1 21798944
AT2G42490.1 TraesCS4B01G190200.1 AT1G13520.1 21798944
AT2G42490.1 TraesCS4D01G191600.1 AT1G13520.1 21798944
AT2G42490.1 TraesCS7D01G441700.1 AT1G13520.1 21798944
AT2G42490.1 TraesCS2A01G327600.1 AT2G42490.1 21798944
AT2G42490.1 TraesCS2B01G354400.1 AT2G42490.1 21798944
AT2G42490.1 TraesCS2D01G335300.1 AT2G42490.1 21798944
AT2G42490.1 TraesCS6A01G207600.3 AT2G42490.1 21798944
AT2G42490.1 TraesCS6B01G236300.4 AT2G42490.1 21798944
AT2G42490.1 TraesCS6D01G191300.1 AT2G42490.1 21798944
AT2G42490.1 TraesCS1A01G190200.2 AT5G46570.1 21798944
AT2G42490.1 TraesCS1B01G192300.3 AT5G46570.1 21798944
AT2G42490.1 TraesCS1D01G194300.1 AT5G46570.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2B01G354400.1 Wheat peroxisome 99.61 99.74
TraesCS2A01G327600.1 Wheat golgi 98.71 99.22
Os04t0476100-01 Rice peroxisome 63.61 95.17
EES12364 Sorghum peroxisome 91.87 91.05
Zm00001d003309_P002 Maize mitochondrion, peroxisome 91.35 90.77
HORVU2Hr1G082420.6 Barley cytosol 68.39 89.68
TraesCS6D01G191300.1 Wheat peroxisome 85.68 88.18
GSMUA_Achr6P06650_001 Banana peroxisome 77.94 86.53
GSMUA_Achr10P... Banana peroxisome 77.81 85.05
KRH45608 Soybean mitochondrion 78.58 79.5
KRH69629 Soybean peroxisome 77.94 79.47
KRG99420 Soybean plastid 78.32 79.45
VIT_00s0225g00090.t01 Wine grape peroxisome 79.1 79.2
Solyc05g013440.2.1 Tomato peroxisome, plastid 77.81 77.71
CDY47975 Canola peroxisome 77.68 77.68
CDY14839 Canola peroxisome, plastid 77.68 77.68
VIT_17s0000g09100.t01 Wine grape peroxisome 79.1 77.5
AT2G42490.1 Thale cress peroxisome 77.55 77.45
Bra016871.1-P Field mustard plastid 77.42 76.24
KRH54329 Soybean plastid 75.74 75.84
PGSC0003DMT400059626 Potato peroxisome 76.13 75.06
GSMUA_Achr6P12170_001 Banana peroxisome 77.42 74.72
Solyc08g014330.2.1 Tomato peroxisome, plastid 75.74 74.49
Solyc06g071700.1.1 Tomato plastid 74.19 74.29
PGSC0003DMT400069411 Potato plastid 64.39 72.32
KRH74530 Soybean cytosol 22.71 57.7
CDY35376 Canola plastid 76.65 55.77
CDY22564 Canola peroxisome, plastid 76.9 55.44
KRH03234 Soybean nucleus 72.9 43.2
TraesCS4D01G281700.1 Wheat cytosol, extracellular, plasma membrane, plastid 25.55 28.09
TraesCS2D01G075000.1 Wheat golgi 25.55 27.01
Protein Annotations
KEGG:00260+1.4.3.21KEGG:00350+1.4.3.21KEGG:00360+1.4.3.21KEGG:00410+1.4.3.21KEGG:00950+1.4.3.21KEGG:00960+1.4.3.21
Gene3D:2.70.98.20Gene3D:3.10.450.40MapMan:50.1.4InterPro:Cu_amine_oxidaseInterPro:Cu_amine_oxidase_CInterPro:Cu_amine_oxidase_C_sf
InterPro:Cu_amine_oxidase_N-regInterPro:Cu_amine_oxidase_N3GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005507
GO:GO:0008131GO:GO:0008150GO:GO:0008152GO:GO:0009308GO:GO:0048038GO:GO:0055114
InterPro:IPR036460PFAM:PF01179PFAM:PF02728PANTHER:PTHR10638PANTHER:PTHR10638:SF18SUPFAM:SSF49998
SUPFAM:SSF54416EnsemblPlantsGene:TraesCS2D01G335300EnsemblPlants:TraesCS2D01G335300.1SEG:seg::
Description
No Description!
Coordinates
chr2D:-:428558810..428565154
Molecular Weight (calculated)
85824.4 Da
IEP (calculated)
7.073
GRAVY (calculated)
-0.302
Length
775 amino acids
Sequence
(BLAST)
001: MASAQEKAAL CCGGPARDAL RAAIAAPGKA VSMSAAGGGG ERVVSAAGGG AVMDDIASAA QPTTAKASSK GIPIMTRAQR FHPLDPLSAA EIAVAVATVR
101: AAGKSPEERD SMRFVEAVLL EPEKNVVALA DAYFFPPFQP SLLPRTKGSA VIPSRLPPRR AKLVVYNRHS NETTIWIVEL SEVHAATRGG HHRGKVISSE
201: VVPDVQPAMD AMEYAECEAT VKNYPPFVEA MKKRGVDDME LVMVDAWCAG YYSDADAPSR RLARPLIFCR TESDSPMENG YARPVEGIHV VVDMQNNIVI
301: EFEDRKFVPL PPPDHLRNYT PGETRGGVDR SDVKPLIINQ PEGPSFRING YFVEWQKWNF RIGFTPKEGL VIYSVAYVDG SRGRRPIAHR LSFVEMVVPY
401: GDPSEPHYRK NAFDAGEDGL GKNAHSLKKG CDCLGYIKYF DAHFTNFTGH VETIENCVCL HEEDHGILWK HQDWRTGLAE VRRSRRLTVS FICTVANYEY
501: GFYWHFYQDG KIEAEVKLTG ILSLGALMPG ESRKYGTTIA PSLYAPVHQH FFVARMDMAV DCKPNEAHNQ VVEVNVKVES AGTNNVHNNA FYAEEKILKS
601: ELQAMRDCDP SSARHWIVRN TRAVNRTGQP TGFRLVPGSN CLPFALPEAK FLRRAGFLKH NLWVTPYKSD EKFPGGEFPN QNPRLHEGLA TWVKKDRPLE
701: ETDIVLWYVF GLTHIPRLED WPVMPVEHIG FMLMPHGFFN CSPAVDVPPG TSDAADVKEA ESPKAIQNGA LVSKL
Best Arabidopsis Sequence Match ( AT2G42490.1 )
(BLAST)
001: MASASKKTSA CPHHGGSLPP PKLVSAAPDT VAVWSDADDQ RASKVSLESV IRPVDSFPDN TAKKPANKGI SVMPRTETKH PLDPLSAAEI SVAVATVRAA
101: GANPEVRDGM RFIEVASVEP DKQVVALADA YFFPPFQPSL LPRTKSGPVI PMKLPPRRAR LVVYNQKSNE TSVWIVALSE VHAVTRGGHH RGRVVSSQVI
201: PDVQPPMDAA EYAECEAIVK DFPPFIEAMK RRGIEDMDLV MVDPWCVGYH SEADAPSRRL AKPLIYCRTD SDSPMENGYA RPVEGIYVLV DMQNMVVIEF
301: EDRKFVPLPP PDPLRNYTPG ESRGGVDRSD VKPLQIIQPE GPSFRVRGYF VEWQKWNFRI GFTPREGLVI HSVAYVDGSR GRRPVAHRLS FVEMVVPYGD
401: PNEPHYRKNA FDAGEDGLGK NAHSLKKGCD CLGSIKYFDA HFTNFTGGVE TIENCVCLHE EDHGILWKHQ DWRTGLAEVR RSRRLTVSFL CTVANYEYGF
501: YWHFYQDGKI EAEVKLTGIL SLGALQPGET RKYGTTIAPG LYAPVHQHFF IARMDMSVDC KPAEAFNQVV EVNVRVDERG ENNVHNNAFY AEEKLLKSEA
601: VAMRDCDPLS ARHWIVRNTR TVNRTGQLTG YKLVPGSNCL PLARPEAKFL RRAAFLKHNL WVTRYAPDEK FPGGEFPNQN PRAGEGLATW VKQNRSLEES
701: DVVLWYVFGI THVPRLEDWP VMPVEHIGFT LMPHGFFNCS PAVDVPPNPC ELETKESEVK EVVAPKALQT GLLSKL
Arabidopsis Description
Amine oxidase [Source:UniProtKB/TrEMBL;Acc:Q8L866]
SUBAcon: [peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.