Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G191600.1 | Wheat | cytosol | 92.68 | 93.38 |
| TraesCS4A01G113900.1 | Wheat | cytosol | 92.17 | 93.11 |
| Zm00001d050302_P001 | Maize | cytosol, plastid | 67.17 | 70.93 |
| Os08t0412700-01 | Rice | cytosol, plasma membrane | 64.9 | 67.99 |
| OQU80420 | Sorghum | cytosol | 63.13 | 67.39 |
| GSMUA_Achr5P27350_001 | Banana | mitochondrion | 45.2 | 46.13 |
| GSMUA_Achr5P27360_001 | Banana | mitochondrion | 43.94 | 45.31 |
| GSMUA_Achr3P06220_001 | Banana | cytosol | 40.15 | 41.51 |
| GSMUA_Achr9P18410_001 | Banana | cytosol | 36.87 | 38.22 |
| Solyc05g010460.2.1 | Tomato | cytosol, nucleus, peroxisome | 37.12 | 37.03 |
| PGSC0003DMT400019458 | Potato | cytosol | 31.06 | 36.39 |
| Solyc05g010470.2.1 | Tomato | cytosol | 28.79 | 36.08 |
| VIT_01s0011g02320.t01 | Wine grape | cytosol | 35.61 | 36.06 |
| PGSC0003DMT400019462 | Potato | cytosol | 35.86 | 35.95 |
| CDY26653 | Canola | cytosol | 31.82 | 35.39 |
| KRH71102 | Soybean | cytosol | 33.59 | 34.82 |
| CDY16094 | Canola | cytosol | 32.83 | 34.21 |
| Bra026902.1-P | Field mustard | cytosol | 32.83 | 34.21 |
| Bra026901.1-P | Field mustard | cytosol | 32.58 | 33.95 |
| CDY26654 | Canola | cytosol | 32.58 | 33.95 |
| AT1G13520.1 | Thale cress | cytosol | 32.58 | 33.33 |
| AT1G13470.1 | Thale cress | cytosol | 31.82 | 33.25 |
| CDY21100 | Canola | cytosol | 32.32 | 33.16 |
| Bra016728.1-P | Field mustard | cytosol | 32.32 | 33.16 |
| CDY50165 | Canola | cytosol | 32.07 | 33.16 |
| AT1G13510.1 | Thale cress | cytosol | 31.82 | 33.16 |
| VIT_01s0011g02330.t01 | Wine grape | cytosol, mitochondrion | 32.83 | 32.91 |
| CDY50167 | Canola | cytosol | 32.07 | 32.82 |
| CDY16092 | Canola | cytosol | 23.48 | 32.75 |
| CDY21099 | Canola | cytosol | 31.57 | 32.55 |
| AT1G13480.1 | Thale cress | nucleus | 31.57 | 32.3 |
| KRH71091 | Soybean | cytosol | 32.07 | 32.07 |
| AT1G13530.1 | Thale cress | cytosol | 31.06 | 31.95 |
| AT1G13540.1 | Thale cress | cytosol | 30.56 | 31.76 |
| CDY50164 | Canola | cytosol | 30.81 | 31.44 |
| AT1G13550.1 | Thale cress | cytosol | 30.56 | 31.19 |
| AT1G13490.2 | Thale cress | cytosol | 30.05 | 31.15 |
| CDX98103 | Canola | cytosol | 29.04 | 31.08 |
| CDY21101 | Canola | cytosol, mitochondrion | 30.3 | 30.93 |
| Solyc02g089650.2.1 | Tomato | mitochondrion | 31.06 | 30.9 |
| Bra019719.1-P | Field mustard | cytosol | 29.55 | 30.71 |
| Bra016727.1-P | Field mustard | cytosol | 30.05 | 30.67 |
| PGSC0003DMT400026205 | Potato | mitochondrion | 30.81 | 30.65 |
| PGSC0003DMT400059315 | Potato | cytosol | 21.46 | 30.47 |
| AT1G13500.1 | Thale cress | cytosol | 29.55 | 30.31 |
| CDY30029 | Canola | cytosol | 29.04 | 30.18 |
| CDY16093 | Canola | cytosol | 25.76 | 29.65 |
| KRG93807 | Soybean | mitochondrion, nucleus | 30.3 | 29.56 |
| CDY48822 | Canola | cytosol | 15.4 | 29.05 |
| CDY47587 | Canola | nucleus | 13.38 | 28.96 |
| KRH63067 | Soybean | cytosol, golgi, mitochondrion, nucleus | 24.24 | 28.49 |
| Bra026900.1-P | Field mustard | cytosol | 27.78 | 28.06 |
| CDY26655 | Canola | cytosol | 27.78 | 28.06 |
| CDY15029 | Canola | cytosol, mitochondrion | 29.8 | 27.83 |
| AT1G61600.1 | Thale cress | cytosol | 29.29 | 27.55 |
| CDY16095 | Canola | cytosol | 27.27 | 27.48 |
| Bra038594.1-P | Field mustard | nucleus | 29.55 | 24.84 |
| CDY26357 | Canola | mitochondrion | 29.55 | 24.84 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G190200.1 | EnsemblPlantsGene:TraesCS4B01G190200 | InterPro:DUF1262 | PANTHER:PTHR31050 | PANTHER:PTHR31050:SF0 | PFAM:PF06880 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr4B:-:413110138..413111328
Molecular Weight (calculated)
44544.5 Da
IEP (calculated)
7.870
GRAVY (calculated)
-0.504
Length
396 amino acids
Sequence
(BLAST)
(BLAST)
001: MYICKSKLEG HTQEAENQGA MYATKPLSLF MSHPEAASWP PPDGRNSGYL VVKGDDDGDD DETCCWGQCG GTRVRDLPFP QNRVLTLRYT EHHGQSSTTY
101: TDSVVFVPVP DQPVASNRYY AVVASGKRKG LVRACSREED MTPCCFCRCI NDVKPQPFDP ADLYQKIEIV QRRRGRFTAK AVAADGFPNY LYRKKYWRVY
201: ASKPTKNHLD LGDAPGLNVA LRSRQLADAS LLDAFPAATA VSTAVGKWYC PFYLIKEDGM SPSEQMDRAA FYEVALEQRW EPVHDTHSGS KLYSRKVFIG
301: GSLEARQEVS SGASRHGDGY VWFRAVAGQS VGVCASVWER MRWEEYRGGW VDEEEEAEKV AGRSVLVERF VVKRMDRTVV VAFDFVHLNK VRGKQA
101: TDSVVFVPVP DQPVASNRYY AVVASGKRKG LVRACSREED MTPCCFCRCI NDVKPQPFDP ADLYQKIEIV QRRRGRFTAK AVAADGFPNY LYRKKYWRVY
201: ASKPTKNHLD LGDAPGLNVA LRSRQLADAS LLDAFPAATA VSTAVGKWYC PFYLIKEDGM SPSEQMDRAA FYEVALEQRW EPVHDTHSGS KLYSRKVFIG
301: GSLEARQEVS SGASRHGDGY VWFRAVAGQS VGVCASVWER MRWEEYRGGW VDEEEEAEKV AGRSVLVERF VVKRMDRTVV VAFDFVHLNK VRGKQA
001: MYVTRHLSEY QRNSSDLTRS LPEGPNSGVL VIQDEESKPT CCFGNCYDGE LKGLPFPQNA KLTVTYRTGT GNDRRSYHDQ VLFIPVLDQP YYSNRYYVIK
101: RRGKQSGGAS ASAKEEDRVP CCFCFSYVPE VKPQEADPYD IYQQFEVHQR KPSSGYYTAT SVAPNGIPPE FLKRKYWTVE YSNSQDFGLT DDAKGINTTL
201: RSKLPNDMNT SVVVGKWYVP FIFVKERDAK DQIKSSPYYS MTLKQRWEEV YSCVNVNYNQ KGGEVVVDVD VETQVVKLEG QETISRETSG GGFVWFSVLG
301: DERQDKKIGL GSVVVERMKW EEERFGWLNN GERSNIKRSE RFEGGSSHWK SYRCLVLIES FELKRMDGSL VLTYEFTHVD KLKSKWD
101: RRGKQSGGAS ASAKEEDRVP CCFCFSYVPE VKPQEADPYD IYQQFEVHQR KPSSGYYTAT SVAPNGIPPE FLKRKYWTVE YSNSQDFGLT DDAKGINTTL
201: RSKLPNDMNT SVVVGKWYVP FIFVKERDAK DQIKSSPYYS MTLKQRWEEV YSCVNVNYNQ KGGEVVVDVD VETQVVKLEG QETISRETSG GGFVWFSVLG
301: DERQDKKIGL GSVVVERMKW EEERFGWLNN GERSNIKRSE RFEGGSSHWK SYRCLVLIES FELKRMDGSL VLTYEFTHVD KLKSKWD
Arabidopsis Description
At1g13520 [Source:UniProtKB/TrEMBL;Acc:Q6NNH1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.