Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98103 | Canola | cytosol | 78.96 | 82.16 |
| CDY30029 | Canola | cytosol | 80.78 | 81.63 |
| AT1G13500.1 | Thale cress | cytosol | 81.04 | 80.83 |
| AT1G13490.2 | Thale cress | cytosol | 79.74 | 80.37 |
| Bra019719.1-P | Field mustard | cytosol | 79.48 | 80.31 |
| AT1G13520.1 | Thale cress | cytosol | 63.9 | 63.57 |
| AT1G13480.1 | Thale cress | nucleus | 62.86 | 62.53 |
| AT1G13470.1 | Thale cress | cytosol | 61.3 | 62.27 |
| AT1G13540.1 | Thale cress | cytosol | 58.18 | 58.79 |
| AT1G13510.1 | Thale cress | cytosol | 56.62 | 57.37 |
| AT1G13550.1 | Thale cress | cytosol | 55.06 | 54.64 |
| VIT_01s0011g02320.t01 | Wine grape | cytosol | 45.71 | 45.01 |
| KRH71091 | Soybean | cytosol | 45.45 | 44.19 |
| PGSC0003DMT400019462 | Potato | cytosol | 45.19 | 44.05 |
| KRH71102 | Soybean | cytosol | 43.64 | 43.98 |
| KRH63067 | Soybean | cytosol, golgi, mitochondrion, nucleus | 37.92 | 43.32 |
| PGSC0003DMT400019458 | Potato | cytosol | 37.66 | 42.9 |
| VIT_01s0011g02330.t01 | Wine grape | cytosol, mitochondrion | 43.38 | 42.28 |
| Solyc05g010460.2.1 | Tomato | cytosol, nucleus, peroxisome | 42.86 | 41.56 |
| Solyc05g010470.2.1 | Tomato | cytosol | 33.25 | 40.51 |
| PGSC0003DMT400059315 | Potato | cytosol | 29.35 | 40.5 |
| GSMUA_Achr5P27350_001 | Banana | mitochondrion | 37.92 | 37.63 |
| GSMUA_Achr5P27360_001 | Banana | mitochondrion | 37.4 | 37.5 |
| GSMUA_Achr3P06220_001 | Banana | cytosol | 37.14 | 37.34 |
| GSMUA_Achr9P18410_001 | Banana | cytosol | 36.1 | 36.39 |
| Os08t0413100-00 | Rice | cytosol, plasma membrane | 39.22 | 36.39 |
| Os08t0413200-00 | Rice | cytosol | 39.74 | 36.34 |
| Os08t0413500-00 | Rice | cytosol, plasma membrane | 38.18 | 36.12 |
| AT1G61600.1 | Thale cress | cytosol | 38.44 | 35.15 |
| Zm00001d050302_P001 | Maize | cytosol, plastid | 33.77 | 34.67 |
| OQU80420 | Sorghum | cytosol | 32.21 | 33.42 |
| Os08t0412700-01 | Rice | cytosol, plasma membrane | 32.73 | 33.33 |
| Os08t0412800-01 | Rice | plasma membrane | 32.47 | 32.47 |
| TraesCS7D01G441700.1 | Wheat | cytosol | 37.92 | 32.02 |
| EES09009 | Sorghum | cytosol | 36.62 | 31.83 |
| TraesCS4A01G113900.1 | Wheat | cytosol | 31.95 | 31.38 |
| TraesCS4D01G191600.1 | Wheat | cytosol | 31.95 | 31.3 |
| TraesCS4B01G190200.1 | Wheat | cytosol | 31.95 | 31.06 |
Protein Annotations
| MapMan:35.2 | EntrezGene:837913 | ProteinID:AEE29030.1 | ArrayExpress:AT1G13530 | EnsemblPlantsGene:AT1G13530 | RefSeq:AT1G13530 |
| TAIR:AT1G13530 | RefSeq:AT1G13530-TAIR-G | EnsemblPlants:AT1G13530.1 | TAIR:AT1G13530.1 | InterPro:DUF1262 | UniProt:F4HQU5 |
| GO:GO:0005575 | GO:GO:0008150 | RefSeq:NP_172810.1 | PFAM:PF06880 | PANTHER:PTHR31050 | PANTHER:PTHR31050:SF2 |
| UniParc:UPI0000162D64 | SEG:seg | : | : | : | : |
Description
Protein of unknown function (DUF1262) [Source:TAIR;Acc:AT1G13530]
Coordinates
chr1:-:4633590..4635129
Molecular Weight (calculated)
43987.4 Da
IEP (calculated)
7.035
GRAVY (calculated)
-0.438
Length
385 amino acids
Sequence
(BLAST)
(BLAST)
001: MYVTKRLSEY QRNPSELTFL PTEGPNSGVL VIQDEESQPT CCFGKCFGCD LNGLPFPQNT RVTVKYQIGH GDDRIVLLDS VAFIPVLHQP PSSNLYYVIR
101: RRGKHAGEAC VSAKEEDKVS CCLCFTYVSN ATPRLLDPFD IYQQFEIHQR GSSTRKFFAT SVASDGIPPR FLRRKGWTVP FSASQDYGLI DDAKGVVDAK
201: LRYELPDFGK SVVVGKWYVP FLFVKEGDAK DQMKKSMYYS MTLHQRFEEV FFCENVDNKN CEVIVDVEVE TEVVKLEGEN IGRETKGVNS DGVVWFGVSE
301: TQKIGIGSVV LERMKWEEER FGWSKKGNEL KSSIKRTEKF EGGGPQWKSY RCYVLVETFE LKKTDGSLVL TYEFRHVDKL KSKWD
101: RRGKHAGEAC VSAKEEDKVS CCLCFTYVSN ATPRLLDPFD IYQQFEIHQR GSSTRKFFAT SVASDGIPPR FLRRKGWTVP FSASQDYGLI DDAKGVVDAK
201: LRYELPDFGK SVVVGKWYVP FLFVKEGDAK DQMKKSMYYS MTLHQRFEEV FFCENVDNKN CEVIVDVEVE TEVVKLEGEN IGRETKGVNS DGVVWFGVSE
301: TQKIGIGSVV LERMKWEEER FGWSKKGNEL KSSIKRTEKF EGGGPQWKSY RCYVLVETFE LKKTDGSLVL TYEFRHVDKL KSKWD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.