CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98876
KRH14452
KRH23958
KRH39841
KRH46090
KRH73702

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13520.1	KRG98876	AT2G42790.1	21798944
AT1G13520.1	KRH14452	AT2G42790.1	21798944
AT1G13520.1	KRH46090	AT2G42790.1	21798944
AT1G13520.1	KRH73702	AT2G42790.1	21798944
AT1G13520.1	KRH23958	AT4G25200.1	21798944
AT1G13520.1	KRH39841	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0011g02320.t01	Wine grape	cytosol	55.24	53.96
VIT_01s0011g02330.t01	Wine grape	cytosol, mitochondrion	55.5	53.67
PGSC0003DMT400019462	Potato	cytosol	53.66	51.9
PGSC0003DMT400019458	Potato	cytosol	45.29	51.18
Solyc05g010470.2.1	Tomato	cytosol	41.36	50.0
KRH71091	Soybean	cytosol	51.83	50.0
KRH63067	Soybean	cytosol, golgi, mitochondrion, nucleus	43.72	49.55
Solyc05g010460.2.1	Tomato	cytosol, nucleus, peroxisome	51.31	49.37
PGSC0003DMT400059315	Potato	cytosol	34.29	46.95
Bra026901.1-P	Field mustard	cytosol	45.03	45.26
CDY26654	Canola	cytosol	44.5	44.74
CDY16094	Canola	cytosol	43.98	44.21
AT1G13530.1	Thale cress	cytosol	43.98	43.64
CDY50165	Canola	cytosol	43.72	43.6
Bra026902.1-P	Field mustard	cytosol	43.19	43.42
CDY26653	Canola	cytosol	40.31	43.26
GSMUA_Achr5P27350_001	Banana	mitochondrion	43.72	43.04
GSMUA_Achr5P27360_001	Banana	mitochondrion	43.19	42.97
AT1G13520.1	Thale cress	cytosol	43.46	42.89
AT1G13540.1	Thale cress	cytosol	42.67	42.78
CDY21100	Canola	cytosol	43.19	42.75
Bra016728.1-P	Field mustard	cytosol	42.93	42.49
CDX98103	Canola	cytosol	41.1	42.43
CDY50164	Canola	cytosol	42.93	42.27
CDY21099	Canola	cytosol	42.41	42.19
AT1G13510.1	Thale cress	cytosol	41.88	42.11
Bra016727.1-P	Field mustard	cytosol	42.67	42.01
AT1G13470.1	Thale cress	cytosol	41.36	41.69
CDY21101	Canola	cytosol, mitochondrion	42.15	41.49
CDY30029	Canola	cytosol	41.36	41.47
Bra019719.1-P	Field mustard	cytosol	41.36	41.47
AT1G13500.1	Thale cress	cytosol	41.88	41.45
KRG93807	Soybean	mitochondrion, nucleus	43.98	41.38
AT1G13490.2	Thale cress	cytosol	41.1	41.1
AT1G13480.1	Thale cress	nucleus	41.1	40.57
CDY50167	Canola	cytosol	40.84	40.31
CDY16092	Canola	cytosol	29.58	39.79
GSMUA_Achr3P06220_001	Banana	cytosol	39.53	39.43
AT1G13550.1	Thale cress	cytosol	39.53	38.92
GSMUA_Achr9P18410_001	Banana	cytosol	38.74	38.74
Os08t0413500-00	Rice	cytosol, plasma membrane	40.84	38.33
Os08t0413100-00	Rice	cytosol, plasma membrane	41.1	37.83
Os08t0413200-00	Rice	cytosol	41.36	37.53
Zm00001d050302_P001	Maize	cytosol, plastid	36.13	36.8
CDY16095	Canola	cytosol	37.7	36.64
CDY26655	Canola	cytosol	37.43	36.48
Bra026900.1-P	Field mustard	cytosol	37.43	36.48
Os08t0412700-01	Rice	cytosol, plasma membrane	35.6	35.98
TraesCS4A01G113900.1	Wheat	cytosol	35.6	34.69
EES09009	Sorghum	cytosol	40.05	34.54
OQU80420	Sorghum	cytosol	33.51	34.5
TraesCS7D01G441700.1	Wheat	cytosol	40.58	33.99
TraesCS4D01G191600.1	Wheat	cytosol	34.82	33.84
TraesCS4B01G190200.1	Wheat	cytosol	34.82	33.59
CDY16093	Canola	cytosol	29.84	33.14
Os08t0412800-01	Rice	plasma membrane	32.2	31.95

Protein Annotations

EMBL:ACUP02000860	EnsemblPlants:KRH71102	EnsemblPlantsGene:GLYMA_02G129700	InterPro:DUF1262	PANTHER:PTHR31050	PANTHER:PTHR31050:SF2
PFAM:PF06880	ProteinID:KRH71102	ProteinID:KRH71102.1	UniParc:UPI0002336B16	UniProt:I1JEQ8	MapMan:35.2

Description

hypothetical protein

Coordinates

chr2:-:13308833..13310486

Molecular Weight (calculated)

44401.0 Da

IEP (calculated)

8.703

GRAVY (calculated)

-0.552

Length

382 amino acids

Sequence
(BLAST)

001: MYVTRPLSMY KRNPSAVSDP PLGPNSGYLV ILDKEAQAYS FFGLFKDRAI RDLPFPQNKN LSINYGSDGE EDLFVPVLNQ PLSSNRYYVI KRKGKHKGQA
101: STSSKEEDME TFLCCSFVQD VKPRPLDPSD DYQQVEIIKR VNNDFKAKSV APDGILPGLL RRKGWRVYAH TPTDYHLGEA LGSDDSLRAK LPDFNVFPLS
201: NDRSESVDVG KWYCPFMFVK ERLMKLKEQM KKTVFYELTL KQRWEKIFSK ENNDGENLAV FVDVVVQTEV AKIAGREAVW NENGERVVWF KSFDDEGLEI
301: TSVGLSLKIV DRMRWEQERV GWIAGNQRQV RVERVEEFGG TNRWRKFSCY ALVESFVLKR MDRKLVLTCD YRHTHQIRCI WE

Best Arabidopsis Sequence Match ( AT1G13480.1 )
(BLAST)

001: MYVTRRLSEY QKKPSELKLL PPEGPNSGIM VIQDEESQAT CCFGSCYEGR LKGLPFPQNV KLNAAYTSGG GEHQTTHLTP VVFIPVLDQP LSSNLYYVLQ
101: RRGKHTGKAS ASATEEERVS SCFCFSYIPD AKPQEADPYD IYQQFEIHQR RSSSRYYSAT SVASDGVPPN YLKRKDWWVS YSTSHDFGLR DDAKGINTKL
201: RLDSELTSLG KSIEIGKWYV PFIFVMEGDV KDQMNKSTFY SVTLQQRWEE VFFCENIGNE HFEVVVDVDV ETESVKLEGQ ETNLREDSGD GVVWFSVLRD
301: EKDDKKIGLG SVVVERMKWE EERFGWLNEA GERSNIKRSE RFEGGSSHWK SYRCYVLIES FELTRMDGSL VLTYEFRHVD KLKSKWD

Arabidopsis Description

At1g13480 [Source:UniProtKB/TrEMBL;Acc:Q56Y29]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.