Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019719.1-P | Field mustard | cytosol | 96.76 | 93.96 |
| CDY30029 | Canola | cytosol | 95.95 | 93.18 |
| AT1G13530.1 | Thale cress | cytosol | 82.16 | 78.96 |
| AT1G13500.1 | Thale cress | cytosol | 77.57 | 74.35 |
| AT1G13490.2 | Thale cress | cytosol | 76.22 | 73.82 |
| CDY50165 | Canola | cytosol | 64.86 | 62.66 |
| CDY21100 | Canola | cytosol | 64.05 | 61.4 |
| CDY21099 | Canola | cytosol | 62.7 | 60.42 |
| CDY26653 | Canola | cytosol | 58.11 | 60.39 |
| CDY16092 | Canola | cytosol | 46.22 | 60.21 |
| CDY16094 | Canola | cytosol | 61.62 | 60.0 |
| CDY26654 | Canola | cytosol | 61.08 | 59.47 |
| CDY50167 | Canola | cytosol | 61.89 | 59.17 |
| CDY50164 | Canola | cytosol | 57.03 | 54.38 |
| CDY21101 | Canola | cytosol, mitochondrion | 56.49 | 53.87 |
| CDY16095 | Canola | cytosol | 51.62 | 48.6 |
| CDY26655 | Canola | cytosol | 51.35 | 48.47 |
| VIT_01s0011g02320.t01 | Wine grape | cytosol | 45.68 | 43.22 |
| PGSC0003DMT400019462 | Potato | cytosol | 45.68 | 42.78 |
| CDY16093 | Canola | cytosol | 39.46 | 42.44 |
| KRH71091 | Soybean | cytosol | 44.05 | 41.16 |
| KRH71102 | Soybean | cytosol | 42.43 | 41.1 |
| VIT_01s0011g02330.t01 | Wine grape | cytosol, mitochondrion | 43.51 | 40.76 |
| KRH63067 | Soybean | cytosol, golgi, mitochondrion, nucleus | 37.03 | 40.65 |
| PGSC0003DMT400059315 | Potato | cytosol | 30.27 | 40.14 |
| PGSC0003DMT400019458 | Potato | cytosol | 36.22 | 39.65 |
| Solyc05g010460.2.1 | Tomato | cytosol, nucleus, peroxisome | 42.16 | 39.29 |
| Solyc05g010470.2.1 | Tomato | cytosol | 33.24 | 38.92 |
| GSMUA_Achr5P27360_001 | Banana | mitochondrion | 39.46 | 38.02 |
| GSMUA_Achr5P27350_001 | Banana | mitochondrion | 39.73 | 37.89 |
| GSMUA_Achr3P06220_001 | Banana | cytosol | 37.03 | 35.77 |
| Os08t0413500-00 | Rice | cytosol, plasma membrane | 39.19 | 35.63 |
| Os08t0413100-00 | Rice | cytosol, plasma membrane | 39.73 | 35.42 |
| Os08t0413200-00 | Rice | cytosol | 40.0 | 35.15 |
| GSMUA_Achr9P18410_001 | Banana | cytosol | 35.41 | 34.29 |
| CDY15029 | Canola | cytosol, mitochondrion | 39.19 | 34.2 |
| CDY48822 | Canola | cytosol | 18.92 | 33.33 |
| Zm00001d050302_P001 | Maize | cytosol, plastid | 33.78 | 33.33 |
| CDY47587 | Canola | nucleus | 16.22 | 32.79 |
| Os08t0412800-01 | Rice | plasma membrane | 34.05 | 32.73 |
| OQU80420 | Sorghum | cytosol | 32.7 | 32.61 |
| EES09009 | Sorghum | cytosol | 38.65 | 32.28 |
| Os08t0412700-01 | Rice | cytosol, plasma membrane | 32.97 | 32.28 |
| TraesCS7D01G441700.1 | Wheat | cytosol | 37.84 | 30.7 |
| CDY26357 | Canola | mitochondrion | 38.65 | 30.36 |
| TraesCS4A01G113900.1 | Wheat | cytosol | 31.08 | 29.34 |
| TraesCS4D01G191600.1 | Wheat | cytosol | 31.08 | 29.26 |
| TraesCS4B01G190200.1 | Wheat | cytosol | 31.08 | 29.04 |
Protein Annotations
| EnsemblPlants:CDX98103 | EnsemblPlantsGene:GSBRNA2T00105487001 | InterPro:DUF1262 | PANTHER:PTHR31050 | PANTHER:PTHR31050:SF2 | PFAM:PF06880 |
| ProteinID:CDX98103 | ProteinID:CDX98103.1 | SEG:seg | UniParc:UPI0004EDF8B8 | MapMan:35.2 | : |
Description
BnaA06g08540D
Coordinates
chrLK031902:-:1064611..1066131
Molecular Weight (calculated)
42423.2 Da
IEP (calculated)
6.380
GRAVY (calculated)
-0.460
Length
370 amino acids
Sequence
(BLAST)
(BLAST)
001: MYVTKRLTEY QRNPSELTVQ AEGPNSGVLV IQDEESQPKC CFGKCFDCDL NGLPFPQNAR VTVKYQIGSG DDRIVLLDSV AFVPVLHQPP SSNLYYVIRR
101: SGKHTGAPCC FCFSYIPNAT PRPLDPYDTY QQFEIHQRGS STRKFFATSV ASDGIPPRFL RRKGWTVPFS SSEDFGLVDD AKGVVDAKLR YELPDFDKSV
201: VVGKWYVPFL FVKEGDAKDQ MRRSMYYSMT LHQRFEEVFF CENVEDKQFE AVVDVEVETE VVKLGGGEIA REAKGVDSDK VVWFSVSGTE EKIGLGSVVL
301: EQMKWEEERF GWSKIRSNVK RSERFEGGGP YWKSYRCYVL VESFELRRND GSLVLTYEFK HVDKLKSKWN
101: SGKHTGAPCC FCFSYIPNAT PRPLDPYDTY QQFEIHQRGS STRKFFATSV ASDGIPPRFL RRKGWTVPFS SSEDFGLVDD AKGVVDAKLR YELPDFDKSV
201: VVGKWYVPFL FVKEGDAKDQ MRRSMYYSMT LHQRFEEVFF CENVEDKQFE AVVDVEVETE VVKLGGGEIA REAKGVDSDK VVWFSVSGTE EKIGLGSVVL
301: EQMKWEEERF GWSKIRSNVK RSERFEGGGP YWKSYRCYVL VESFELRRND GSLVLTYEFK HVDKLKSKWN
001: MYVTKRLSEY QRNPSELTFL PTEGPNSGVL VIQDEESQPT CCFGKCFGCD LNGLPFPQNT RVTVKYQIGH GDDRIVLLDS VAFIPVLHQP PSSNLYYVIR
101: RRGKHAGEAC VSAKEEDKVS CCLCFTYVSN ATPRLLDPFD IYQQFEIHQR GSSTRKFFAT SVASDGIPPR FLRRKGWTVP FSASQDYGLI DDAKGVVDAK
201: LRYELPDFGK SVVVGKWYVP FLFVKEGDAK DQMKKSMYYS MTLHQRFEEV FFCENVDNKN CEVIVDVEVE TEVVKLEGEN IGRETKGVNS DGVVWFGVSE
301: TQKIGIGSVV LERMKWEEER FGWSKKGNEL KSSIKRTEKF EGGGPQWKSY RCYVLVETFE LKKTDGSLVL TYEFRHVDKL KSKWD
101: RRGKHAGEAC VSAKEEDKVS CCLCFTYVSN ATPRLLDPFD IYQQFEIHQR GSSTRKFFAT SVASDGIPPR FLRRKGWTVP FSASQDYGLI DDAKGVVDAK
201: LRYELPDFGK SVVVGKWYVP FLFVKEGDAK DQMKKSMYYS MTLHQRFEEV FFCENVDNKN CEVIVDVEVE TEVVKLEGEN IGRETKGVNS DGVVWFGVSE
301: TQKIGIGSVV LERMKWEEER FGWSKKGNEL KSSIKRTEKF EGGGPQWKSY RCYVLVETFE LKKTDGSLVL TYEFRHVDKL KSKWD
Arabidopsis Description
Protein of unknown function (DUF1262) [Source:TAIR;Acc:AT1G13530]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.