Factsheet for GSMUA_Achr3P06220_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
endoplasmic reticulum 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13520.1	GSMUA_Achr10P...	AT2G42790.1	21798944
AT1G13520.1	GSMUA_Achr10P...	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P27350_001	Banana	mitochondrion	59.01	58.25
GSMUA_Achr5P27360_001	Banana	mitochondrion	57.96	57.81
GSMUA_Achr9P18410_001	Banana	cytosol	48.83	48.95
Zm00001d050302_P001	Maize	cytosol, plastid	44.39	45.33
VIT_01s0011g02320.t01	Wine grape	cytosol	45.43	44.5
OQU80420	Sorghum	cytosol	41.78	43.13
Os08t0412700-01	Rice	cytosol, plasma membrane	42.56	43.12
VIT_01s0011g02330.t01	Wine grape	cytosol, mitochondrion	43.08	41.77
TraesCS4D01G191600.1	Wheat	cytosol	41.78	40.71
TraesCS4A01G113900.1	Wheat	cytosol	41.51	40.56
TraesCS4B01G190200.1	Wheat	cytosol	41.51	40.15
KRH71102	Soybean	cytosol	39.43	39.53
Solyc05g010470.2.1	Tomato	cytosol	32.38	39.24
Os08t0412800-01	Rice	plasma membrane	39.16	38.96
Os08t0413100-00	Rice	cytosol, plasma membrane	42.04	38.8
PGSC0003DMT400019458	Potato	cytosol	33.68	38.17
CDY21100	Canola	cytosol	38.38	38.08
CDY21099	Canola	cytosol	38.12	38.02
AT1G13470.1	Thale cress	cytosol	37.6	37.99
PGSC0003DMT400019462	Potato	cytosol	39.16	37.97
AT1G13490.2	Thale cress	cytosol	37.86	37.96
CDY50165	Canola	cytosol	37.86	37.86
Bra016728.1-P	Field mustard	cytosol	38.12	37.82
Bra026902.1-P	Field mustard	cytosol	37.34	37.63
CDY16094	Canola	cytosol	37.08	37.37
Bra026901.1-P	Field mustard	cytosol	37.08	37.37
CDY26654	Canola	cytosol	37.08	37.37
AT1G13530.1	Thale cress	cytosol	37.34	37.14
CDY50164	Canola	cytosol	37.6	37.11
CDY26653	Canola	cytosol	34.46	37.08
CDX98103	Canola	cytosol	35.77	37.03
CDY30029	Canola	cytosol	36.81	37.01
AT1G13520.1	Thale cress	cytosol	37.34	36.95
Solyc05g010460.2.1	Tomato	cytosol, nucleus, peroxisome	38.12	36.78
AT1G13480.1	Thale cress	nucleus	37.08	36.69
CDY50167	Canola	cytosol	37.08	36.69
Os08t0413500-00	Rice	cytosol, plasma membrane	38.9	36.61
CDY21101	Canola	cytosol, mitochondrion	37.08	36.6
TraesCS7D01G441700.1	Wheat	cytosol	43.34	36.4
Os08t0413200-00	Rice	cytosol	39.95	36.34
AT1G13500.1	Thale cress	cytosol	36.55	36.27
Bra019719.1-P	Field mustard	cytosol	36.03	36.22
PGSC0003DMT400026205	Potato	mitochondrion	37.6	36.18
KRH71091	Soybean	cytosol	37.34	36.11
Bra016727.1-P	Field mustard	cytosol	36.55	36.08
KRG93807	Soybean	mitochondrion, nucleus	38.12	35.96
CDY16092	Canola	cytosol	26.63	35.92
EES09009	Sorghum	cytosol	41.51	35.89
Solyc02g089650.2.1	Tomato	mitochondrion	37.08	35.68
AT1G13510.1	Thale cress	cytosol	34.99	35.26
CDY15029	Canola	cytosol, mitochondrion	38.38	34.67
AT1G13540.1	Thale cress	cytosol	34.46	34.65
KRH63067	Soybean	cytosol, golgi, mitochondrion, nucleus	30.29	34.42
PGSC0003DMT400059315	Potato	cytosol	25.07	34.41
AT1G61600.1	Thale cress	cytosol	37.08	33.73
AT1G13550.1	Thale cress	cytosol	33.16	32.73
CDY16095	Canola	cytosol	32.38	31.55
CDY26655	Canola	cytosol	32.11	31.38
Bra026900.1-P	Field mustard	cytosol	32.11	31.38
Bra038594.1-P	Field mustard	nucleus	38.12	31.0
CDY26357	Canola	mitochondrion	37.6	30.57
CDY48822	Canola	cytosol	16.45	30.0
CDY16093	Canola	cytosol	26.89	29.94
CDY47587	Canola	nucleus	13.32	27.87

Protein Annotations

EnsemblPlants:GSMUA_Achr3P06220_001	EnsemblPlants:GSMUA_Achr3T06220_001	EnsemblPlantsGene:GSMUA_Achr3G06220_001	InterPro:DUF1262	PANTHER:PTHR31050	PFAM:PF06880
SEG:seg	UniParc:UPI000295BBBC	UniProt:M0SC89	MapMan:35.2	:	:

Description

Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G06220_001]

Coordinates

chr3:-:4218286..4219723

Molecular Weight (calculated)

43712.9 Da

IEP (calculated)

6.436

GRAVY (calculated)

-0.461

Length

383 amino acids

Sequence
(BLAST)

001: MYVTRPLSTF KNAAGAVHQP PLEGPGSGYL LLQDEELQPA STCCWGACKC DPDRIQQLPF PQNKILTLSY SEQRGETTDT YGSAALFIPV PNQPLSTNRY
101: YVITAKGKHK GKAYTCSKEE DMTSCCVCQC INDVKPKEFD HRDVYQQMEI VCYKGRFTAR PVASDAIPPS ILRKEYWRLH QVEHEEYALG VAAGLDEALR
201: SRLPELHAAG VVVGRWYTPF VFVKEEMDLR DQVKHSAFYE VTLEQFWEEV YACENRHGAE KVAEVKAVVR GEAAFLDGKE AKRYDTHDVD GLVWFKPLDS
301: GGGAVKLSFP VWERMKWEQS RWGWTGDEEQ KVEKIVEYGG EGGWKSLRCY VLVERFAVRR MDGSLVLMVD FRHSSHKVKC IWE

Best Arabidopsis Sequence Match ( AT1G13520.1 )
(BLAST)

001: MYVTRHLSEY QRNSSDLTRS LPEGPNSGVL VIQDEESKPT CCFGNCYDGE LKGLPFPQNA KLTVTYRTGT GNDRRSYHDQ VLFIPVLDQP YYSNRYYVIK
101: RRGKQSGGAS ASAKEEDRVP CCFCFSYVPE VKPQEADPYD IYQQFEVHQR KPSSGYYTAT SVAPNGIPPE FLKRKYWTVE YSNSQDFGLT DDAKGINTTL
201: RSKLPNDMNT SVVVGKWYVP FIFVKERDAK DQIKSSPYYS MTLKQRWEEV YSCVNVNYNQ KGGEVVVDVD VETQVVKLEG QETISRETSG GGFVWFSVLG
301: DERQDKKIGL GSVVVERMKW EEERFGWLNN GERSNIKRSE RFEGGSSHWK SYRCLVLIES FELKRMDGSL VLTYEFTHVD KLKSKWD

Arabidopsis Description

At1g13520 [Source:UniProtKB/TrEMBL;Acc:Q6NNH1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.