Factsheet for GSMUA_Achr5P27360_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
endoplasmic reticulum 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13520.1	GSMUA_Achr10P...	AT2G42790.1	21798944
AT1G13520.1	GSMUA_Achr10P...	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P27350_001	Banana	mitochondrion	94.01	93.04
GSMUA_Achr3P06220_001	Banana	cytosol	57.81	57.96
GSMUA_Achr9P18410_001	Banana	cytosol	48.44	48.69
Zm00001d050302_P001	Maize	cytosol, plastid	47.4	48.53
Os08t0412700-01	Rice	cytosol, plasma membrane	46.88	47.62
OQU80420	Sorghum	cytosol	43.75	45.28
VIT_01s0011g02320.t01	Wine grape	cytosol	46.09	45.27
TraesCS4A01G113900.1	Wheat	cytosol	45.31	44.39
TraesCS4D01G191600.1	Wheat	cytosol	45.31	44.27
TraesCS4B01G190200.1	Wheat	cytosol	45.31	43.94
VIT_01s0011g02330.t01	Wine grape	cytosol, mitochondrion	44.53	43.29
KRH71102	Soybean	cytosol	42.97	43.19
Solyc05g010470.2.1	Tomato	cytosol	34.64	42.09
Os08t0412800-01	Rice	plasma membrane	41.67	41.56
Os08t0413100-00	Rice	cytosol, plasma membrane	44.27	40.96
PGSC0003DMT400019462	Potato	cytosol	41.93	40.76
KRH71091	Soybean	cytosol	41.93	40.66
PGSC0003DMT400019458	Potato	cytosol	35.16	39.94
Os08t0413200-00	Rice	cytosol	43.75	39.91
Os08t0413500-00	Rice	cytosol, plasma membrane	42.19	39.8
Solyc05g010460.2.1	Tomato	cytosol, nucleus, peroxisome	41.15	39.8
CDY16094	Canola	cytosol	39.32	39.74
AT1G13470.1	Thale cress	cytosol	39.06	39.58
CDX98103	Canola	cytosol	38.02	39.46
PGSC0003DMT400059315	Potato	cytosol	28.65	39.43
Bra026901.1-P	Field mustard	cytosol	38.8	39.21
CDY26654	Canola	cytosol	38.8	39.21
CDY21100	Canola	cytosol	39.32	39.12
Bra026902.1-P	Field mustard	cytosol	38.54	38.95
Bra019719.1-P	Field mustard	cytosol	38.54	38.85
CDY30029	Canola	cytosol	38.54	38.85
AT1G13480.1	Thale cress	nucleus	39.06	38.76
AT1G13520.1	Thale cress	cytosol	38.8	38.5
CDY50164	Canola	cytosol	38.8	38.4
CDY21099	Canola	cytosol	38.28	38.28
AT1G13510.1	Thale cress	cytosol	37.76	38.16
CDY21101	Canola	cytosol, mitochondrion	38.54	38.14
CDY50165	Canola	cytosol	38.02	38.12
Bra016728.1-P	Field mustard	cytosol	38.28	38.08
AT1G13540.1	Thale cress	cytosol	37.76	38.06
CDY26653	Canola	cytosol	35.16	37.92
Bra016727.1-P	Field mustard	cytosol	38.28	37.89
AT1G13490.2	Thale cress	cytosol	37.5	37.7
PGSC0003DMT400026205	Potato	mitochondrion	39.06	37.69
AT1G13500.1	Thale cress	cytosol	37.76	37.56
CDY50167	Canola	cytosol	37.76	37.47
Solyc02g089650.2.1	Tomato	mitochondrion	38.8	37.44
AT1G13530.1	Thale cress	cytosol	37.5	37.4
KRH63067	Soybean	cytosol, golgi, mitochondrion, nucleus	32.55	37.09
CDY16092	Canola	cytosol	27.34	36.97
EES09009	Sorghum	cytosol	42.19	36.57
KRG93807	Soybean	mitochondrion, nucleus	38.28	36.21
TraesCS7D01G441700.1	Wheat	cytosol	42.45	35.75
CDY15029	Canola	cytosol, mitochondrion	39.32	35.61
AT1G61600.1	Thale cress	cytosol	38.54	35.15
AT1G13550.1	Thale cress	cytosol	34.64	34.28
CDY26655	Canola	cytosol	33.07	32.4
Bra026900.1-P	Field mustard	cytosol	33.07	32.4
CDY16095	Canola	cytosol	33.07	32.32
CDY26357	Canola	mitochondrion	38.54	31.42
CDY16093	Canola	cytosol	28.12	31.4
Bra038594.1-P	Field mustard	nucleus	38.28	31.21
CDY47587	Canola	nucleus	14.58	30.6
CDY48822	Canola	cytosol	16.67	30.48

Protein Annotations

EnsemblPlants:GSMUA_Achr5P27360_001	EnsemblPlants:GSMUA_Achr5T27360_001	EnsemblPlantsGene:GSMUA_Achr5G27360_001	InterPro:DUF1262	PANTHER:PTHR31050	PFAM:PF06880
SEG:seg	UniParc:UPI000295CA73	UniProt:M0T261	MapMan:35.2	:	:

Description

Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G27360_001]

Coordinates

chr5:-:27886387..27887784

Molecular Weight (calculated)

42978.0 Da

IEP (calculated)

6.865

GRAVY (calculated)

-0.388

Length

384 amino acids

Sequence
(BLAST)

001: MYTTRPLSVF KNSAGAAAIQ PPPPAGPNSG YLLLQDEGAE PNPSCCWGLC EDTRVRELPF PQNRILTITY TEGTHTWQLP ALFIPVLDKS LSSNHYYVIV
101: AKGKKKGKAY TCSLEEDMTT CCFCRSVNDV KPREFDHRDI YQQVEIVCKR GRFTAQSVAP DGFAPWPLRS KYWELYASKP TDFDLTDAWG LDKALRARTP
201: ALELPISGAG GAGLVVGRWY APCVFVKEGD SLRRQMERSA FYDITLEQRW EQVFACENLY GDRRTVEVKA TVGAEGAVLG GVEATRDGAG GQDGVVWYKP
301: LDLEGERVGL SSPVWERMRW EQGRGGWVGG EVKVERSEEY GGVSPWKKFG CYVLVERFVV RRMDGSSALI VDFKHTGTIQ TKWE

Best Arabidopsis Sequence Match ( AT1G13520.1 )
(BLAST)

001: MYVTRHLSEY QRNSSDLTRS LPEGPNSGVL VIQDEESKPT CCFGNCYDGE LKGLPFPQNA KLTVTYRTGT GNDRRSYHDQ VLFIPVLDQP YYSNRYYVIK
101: RRGKQSGGAS ASAKEEDRVP CCFCFSYVPE VKPQEADPYD IYQQFEVHQR KPSSGYYTAT SVAPNGIPPE FLKRKYWTVE YSNSQDFGLT DDAKGINTTL
201: RSKLPNDMNT SVVVGKWYVP FIFVKERDAK DQIKSSPYYS MTLKQRWEEV YSCVNVNYNQ KGGEVVVDVD VETQVVKLEG QETISRETSG GGFVWFSVLG
301: DERQDKKIGL GSVVVERMKW EEERFGWLNN GERSNIKRSE RFEGGSSHWK SYRCLVLIES FELKRMDGSL VLTYEFTHVD KLKSKWD

Arabidopsis Description

At1g13520 [Source:UniProtKB/TrEMBL;Acc:Q6NNH1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.