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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:
  • plastid 2
  • mitochondrion 2
  • cytosol 2
  • vacuole 1
  • nucleus 2
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, peroxisome
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome, plastid, vacuole
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:cytosol, nucleus, plastid, vacuole
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc07g055840.2.1
Solyc08g078700.2.1
Solyc12g011000.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G13520.1 Solyc07g055840.2.1 AT2G42790.1 21798944
AT1G13520.1 Solyc12g011000.1.1 AT2G42790.1 21798944
AT1G13520.1 Solyc08g078700.2.1 AT4G25200.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400019458 Potato cytosol 76.83 90.24
Solyc05g010470.2.1 Tomato cytosol 64.48 81.01
VIT_01s0011g02320.t01 Wine grape cytosol 52.14 52.94
KRH71102 Soybean cytosol 49.37 51.31
VIT_01s0011g02330.t01 Wine grape cytosol, mitochondrion 50.63 50.89
KRH71091 Soybean cytosol 46.35 46.46
AT1G13510.1 Thale cress cytosol 44.08 46.05
CDY26653 Canola cytosol 40.55 45.22
CDY50164 Canola cytosol 43.58 44.59
AT1G13540.1 Thale cress cytosol 42.57 44.36
Bra016727.1-P Field mustard cytosol 43.32 44.33
CDY21101 Canola cytosol, mitochondrion 43.07 44.07
Bra026902.1-P Field mustard cytosol 42.07 43.95
KRH63067 Soybean cytosol, golgi, mitochondrion, nucleus 37.28 43.92
Bra026901.1-P Field mustard cytosol 41.56 43.42
CDY16094 Canola cytosol 41.56 43.42
CDY21100 Canola cytosol 42.07 43.26
AT1G13490.2 Thale cress cytosol 41.56 43.19
CDY26654 Canola cytosol 41.31 43.16
AT1G13520.1 Thale cress cytosol 42.07 43.15
CDY50165 Canola cytosol 41.56 43.08
AT1G13530.1 Thale cress cytosol 41.56 42.86
Bra016728.1-P Field mustard cytosol 41.31 42.49
GSMUA_Achr5P27350_001 Banana mitochondrion 41.31 42.27
CDY30029 Canola cytosol 40.55 42.26
Bra019719.1-P Field mustard cytosol 40.55 42.26
CDY21099 Canola cytosol 40.81 42.19
CDX98103 Canola cytosol 39.29 42.16
AT1G13500.1 Thale cress cytosol 40.55 41.71
AT1G13550.1 Thale cress cytosol 40.55 41.49
AT1G13480.1 Thale cress nucleus 40.3 41.34
GSMUA_Achr5P27360_001 Banana mitochondrion 39.8 41.15
AT1G13470.1 Thale cress cytosol 38.54 40.37
CDY16092 Canola cytosol 28.72 40.14
CDY50167 Canola cytosol 38.79 39.79
Zm00001d050302_P001 Maize cytosol, plastid 37.03 39.2
Os08t0412700-01 Rice cytosol, plasma membrane 37.28 39.15
CDY16095 Canola cytosol 38.54 38.93
CDY26655 Canola cytosol 38.29 38.78
Bra026900.1-P Field mustard cytosol 38.29 38.78
GSMUA_Achr9P18410_001 Banana cytosol 37.03 38.48
GSMUA_Achr3P06220_001 Banana cytosol 36.78 38.12
TraesCS4D01G191600.1 Wheat cytosol 37.53 37.91
TraesCS4A01G113900.1 Wheat cytosol 37.03 37.5
TraesCS4B01G190200.1 Wheat cytosol 37.03 37.12
Solyc02g089650.2.1 Tomato mitochondrion 36.78 36.68
OQU80420 Sorghum cytosol 34.01 36.39
Os08t0412800-01 Rice plasma membrane 34.26 35.32
Os08t0413200-00 Rice cytosol 37.28 35.15
Os08t0413500-00 Rice cytosol, plasma membrane 35.77 34.89
Os08t0413100-00 Rice cytosol, plasma membrane 35.77 34.22
CDY16093 Canola cytosol 29.22 33.72
EES09009 Sorghum cytosol 35.26 31.6
TraesCS7D01G441700.1 Wheat cytosol 36.02 31.36
Protein Annotations
EnsemblPlants:Solyc05g010460.2.1EnsemblPlantsGene:Solyc05g010460.2InterPro:DUF1262PANTHER:PTHR31050PANTHER:PTHR31050:SF2PFAM:PF06880
SEG:segUniParc:UPI000276701CUniProt:K4BXL9MapMan:35.2::
Description
No Description!
Coordinates
chr5:-:4703441..4705121
Molecular Weight (calculated)
45982.8 Da
IEP (calculated)
8.501
GRAVY (calculated)
-0.607
Length
397 amino acids
Sequence
(BLAST)
001: MYVTRSLSYY KKNPEALSLP PDGPNSGYLV IKDSESETYC CFGLCKNYEI MDLPLPQNKK LTIRYEMSNG QSTSVNRDSV MFIPVLNKPL SSNQYYAIKT
101: QGKNKGQAFT CSKEEDKKSS CFCRCVRDVK PKPLDPEEAH QQFEICLYDI CCKGRGSFYA KSVAPDGFPP YFIRRKGWHL SAENPKKFVL NDDAIGLNAE
201: LRQQLPQFNF ASSYKSSEVV VVGNWYCPFV FIKDGTELKK QMKRSMFYEM TLEQRWEQFF TCQNDKINEG KNTVVVDVSL DTQVVLISGS DNQATWDDRN
301: VVEGVVWFKS YGKDGNEVAS LGLRHEIVER MKWEQQRGGW QNQGRIKQVQ EKREDSNGWR RLSCYVLVER FVLRRMDTSV VMTCDFKHIN KVKSIWD
Best Arabidopsis Sequence Match ( AT1G13510.1 )
(BLAST)
001: MYVTRCLSEY QRNPAELRQP PPEGPNSGIL VIQDQHSQTR PCCFGLCLVV DSYLSGLPLP QNLKLAARFN AGEDDATCDP VVFIPVLNKP LSSNCYYAIK
101: RVGKHSGEAP ASGKEEDRVP CCFCSSYVPE AKPKQLDPYD MYQQFMIHQK KPSSRYYYAT SVAPDGVSPW FLKKNKWTVE YSRFQDFELK DDAKGLNTEL
201: RTELPGLGMS VVVGKWYVPF IFVKERDVED QIKRSMYYSM TLEQRWEEVF SYEKDKSRNY DVLVDVELDT EVVKVDGQEI SRGVEANGFV WFAVGDKKIG
301: LGSVVVERMK WEEERFGWTG KGDNERSMVA KRLEKSTDGS LLKNRHCYVL VECFVLKRMD ESLVLTYEFT HVDKLKTKWD
Arabidopsis Description
Uncharacterized protein At1g13510 [Source:UniProtKB/TrEMBL;Acc:Q8VZN5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.