Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26653 | Canola | cytosol | 72.56 | 77.25 |
| Bra026902.1-P | Field mustard | cytosol | 76.52 | 76.32 |
| CDY16092 | Canola | cytosol | 53.3 | 71.13 |
| AT1G13520.1 | Thale cress | cytosol | 70.18 | 68.73 |
| AT1G13480.1 | Thale cress | nucleus | 64.91 | 63.57 |
| AT1G13530.1 | Thale cress | cytosol | 62.27 | 61.3 |
| AT1G13500.1 | Thale cress | cytosol | 62.01 | 60.88 |
| AT1G13540.1 | Thale cress | cytosol | 60.42 | 60.1 |
| AT1G13510.1 | Thale cress | cytosol | 60.16 | 60.0 |
| AT1G13490.2 | Thale cress | cytosol | 60.16 | 59.69 |
| AT1G13550.1 | Thale cress | cytosol | 57.78 | 56.44 |
| CDY16093 | Canola | cytosol | 50.66 | 55.81 |
| VIT_01s0011g02320.t01 | Wine grape | cytosol | 46.44 | 45.01 |
| KRH71091 | Soybean | cytosol | 45.12 | 43.18 |
| KRH71102 | Soybean | cytosol | 41.69 | 41.36 |
| VIT_01s0011g02330.t01 | Wine grape | cytosol, mitochondrion | 43.01 | 41.27 |
| PGSC0003DMT400019462 | Potato | cytosol | 43.01 | 41.27 |
| KRH63067 | Soybean | cytosol, golgi, mitochondrion, nucleus | 36.68 | 41.25 |
| Solyc05g010470.2.1 | Tomato | cytosol | 32.98 | 39.56 |
| GSMUA_Achr5P27360_001 | Banana | mitochondrion | 39.58 | 39.06 |
| PGSC0003DMT400019458 | Potato | cytosol | 34.56 | 38.76 |
| Solyc05g010460.2.1 | Tomato | cytosol, nucleus, peroxisome | 40.37 | 38.54 |
| GSMUA_Achr5P27350_001 | Banana | mitochondrion | 38.79 | 37.89 |
| GSMUA_Achr3P06220_001 | Banana | cytosol | 37.99 | 37.6 |
| PGSC0003DMT400059315 | Potato | cytosol | 27.44 | 37.28 |
| AT1G61600.1 | Thale cress | cytosol | 40.63 | 36.58 |
| Os08t0413500-00 | Rice | cytosol, plasma membrane | 36.94 | 34.4 |
| GSMUA_Achr9P18410_001 | Banana | cytosol | 34.3 | 34.03 |
| Os08t0413200-00 | Rice | cytosol | 37.73 | 33.97 |
| Zm00001d050302_P001 | Maize | cytosol, plastid | 33.25 | 33.6 |
| OQU80420 | Sorghum | cytosol | 32.72 | 33.42 |
| Os08t0413100-00 | Rice | cytosol, plasma membrane | 36.41 | 33.25 |
| Os08t0412800-01 | Rice | plasma membrane | 32.72 | 32.21 |
| Os08t0412700-01 | Rice | cytosol, plasma membrane | 31.93 | 32.01 |
| TraesCS4A01G113900.1 | Wheat | cytosol | 32.98 | 31.89 |
| TraesCS4B01G190200.1 | Wheat | cytosol | 33.25 | 31.82 |
| TraesCS4D01G191600.1 | Wheat | cytosol | 32.19 | 31.04 |
| TraesCS7D01G441700.1 | Wheat | cytosol | 36.41 | 30.26 |
| EES09009 | Sorghum | cytosol | 35.09 | 30.02 |
Protein Annotations
| MapMan:35.2 | EntrezGene:837907 | ProteinID:AEE29023.1 | ArrayExpress:AT1G13470 | EnsemblPlantsGene:AT1G13470 | RefSeq:AT1G13470 |
| TAIR:AT1G13470 | RefSeq:AT1G13470-TAIR-G | EnsemblPlants:AT1G13470.1 | TAIR:AT1G13470.1 | Unigene:At.42028 | InterPro:DUF1262 |
| UniProt:F4HQT8 | GO:GO:0008150 | RefSeq:NP_172804.2 | PFAM:PF06880 | PO:PO:0000013 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009031 |
| PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0025022 | PANTHER:PTHR31050 | PANTHER:PTHR31050:SF2 |
| UniParc:UPI0000196CA5 | SEG:seg | : | : | : | : |
Description
Protein of unknown function (DUF1262) [Source:TAIR;Acc:AT1G13470]
Coordinates
chr1:-:4620101..4621585
Molecular Weight (calculated)
44097.1 Da
IEP (calculated)
8.335
GRAVY (calculated)
-0.637
Length
379 amino acids
Sequence
(BLAST)
(BLAST)
001: MYVTRRLSEY QRNRSELPES PNSGVLIIQD EESRPTCCFG SCYRATLKGL PFPQNANLIV SESRIFLNQT ITYIDPVVFI PVLDQPLSSN RYYVIKRGGK
101: HSGKASANAK EEDRVPCCFC FSYVPEAKPQ EADPNDIYQQ FQIHQKRSSS RYYTATSVAP NGKPPEFLKR KYWNAEYSTS EDFGLKDDAK GIYTEIRSEL
201: PSDFNTSVVV GKWYVPFIFV KEGNAKDQLK SSAYYSMILL QRWEEVYSCE NAYNENREVV VDVEVEPEVV KLEGQEIGKN TKRVDENGVF WFAVAEKRIG
301: LRSVVMERMK WEEERFGWKI EPQRAVVKKS ERFNGGGSNW KSYRCYVLVE SFELRRKDKS LVLTFEFKHV DKLRTKWES
101: HSGKASANAK EEDRVPCCFC FSYVPEAKPQ EADPNDIYQQ FQIHQKRSSS RYYTATSVAP NGKPPEFLKR KYWNAEYSTS EDFGLKDDAK GIYTEIRSEL
201: PSDFNTSVVV GKWYVPFIFV KEGNAKDQLK SSAYYSMILL QRWEEVYSCE NAYNENREVV VDVEVEPEVV KLEGQEIGKN TKRVDENGVF WFAVAEKRIG
301: LRSVVMERMK WEEERFGWKI EPQRAVVKKS ERFNGGGSNW KSYRCYVLVE SFELRRKDKS LVLTFEFKHV DKLRTKWES
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.