Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G190200.1 | Wheat | cytosol | 93.38 | 92.68 |
| TraesCS4A01G113900.1 | Wheat | cytosol | 91.35 | 91.58 |
| Zm00001d050302_P001 | Maize | cytosol, plastid | 67.94 | 71.2 |
| OQU80420 | Sorghum | cytosol | 64.12 | 67.92 |
| Os08t0412700-01 | Rice | cytosol, plasma membrane | 64.38 | 66.93 |
| GSMUA_Achr5P27350_001 | Banana | mitochondrion | 45.55 | 46.13 |
| GSMUA_Achr5P27360_001 | Banana | mitochondrion | 44.27 | 45.31 |
| GSMUA_Achr3P06220_001 | Banana | cytosol | 40.71 | 41.78 |
| GSMUA_Achr9P18410_001 | Banana | cytosol | 37.4 | 38.48 |
| Solyc05g010460.2.1 | Tomato | cytosol, nucleus, peroxisome | 37.91 | 37.53 |
| Solyc05g010470.2.1 | Tomato | cytosol | 30.03 | 37.34 |
| PGSC0003DMT400019462 | Potato | cytosol | 36.9 | 36.71 |
| PGSC0003DMT400019458 | Potato | cytosol | 31.55 | 36.69 |
| VIT_01s0011g02320.t01 | Wine grape | cytosol | 35.62 | 35.81 |
| KRH71102 | Soybean | cytosol | 33.84 | 34.82 |
| CDY26653 | Canola | cytosol | 31.04 | 34.27 |
| CDY16094 | Canola | cytosol | 32.82 | 33.95 |
| Bra026901.1-P | Field mustard | cytosol | 32.57 | 33.68 |
| CDY26654 | Canola | cytosol | 32.57 | 33.68 |
| CDY50165 | Canola | cytosol | 32.57 | 33.42 |
| CDY21100 | Canola | cytosol | 32.82 | 33.42 |
| Bra016728.1-P | Field mustard | cytosol | 32.82 | 33.42 |
| AT1G13520.1 | Thale cress | cytosol | 32.82 | 33.33 |
| Bra026902.1-P | Field mustard | cytosol | 32.06 | 33.16 |
| CDY16092 | Canola | cytosol | 23.92 | 33.1 |
| CDY50167 | Canola | cytosol | 32.57 | 33.07 |
| CDY21099 | Canola | cytosol | 32.06 | 32.81 |
| VIT_01s0011g02330.t01 | Wine grape | cytosol, mitochondrion | 32.82 | 32.66 |
| AT1G13510.1 | Thale cress | cytosol | 31.55 | 32.63 |
| AT1G13470.1 | Thale cress | cytosol | 31.04 | 32.19 |
| AT1G13530.1 | Thale cress | cytosol | 31.3 | 31.95 |
| KRH71091 | Soybean | cytosol | 32.06 | 31.82 |
| AT1G13480.1 | Thale cress | nucleus | 31.3 | 31.78 |
| Solyc02g089650.2.1 | Tomato | mitochondrion | 31.55 | 31.16 |
| AT1G13490.2 | Thale cress | cytosol | 30.28 | 31.15 |
| CDX98103 | Canola | cytosol | 29.26 | 31.08 |
| AT1G13540.1 | Thale cress | cytosol | 30.03 | 30.97 |
| CDY50164 | Canola | cytosol | 30.53 | 30.93 |
| AT1G13550.1 | Thale cress | cytosol | 30.53 | 30.93 |
| PGSC0003DMT400026205 | Potato | mitochondrion | 31.3 | 30.9 |
| PGSC0003DMT400059315 | Potato | cytosol | 21.88 | 30.82 |
| Bra019719.1-P | Field mustard | cytosol | 29.77 | 30.71 |
| CDY21101 | Canola | cytosol, mitochondrion | 30.28 | 30.67 |
| TraesCS7D01G441700.1 | Wheat | cytosol | 35.37 | 30.48 |
| Bra016727.1-P | Field mustard | cytosol | 30.03 | 30.41 |
| AT1G13500.1 | Thale cress | cytosol | 29.77 | 30.31 |
| CDY30029 | Canola | cytosol | 29.26 | 30.18 |
| CDY48822 | Canola | cytosol | 15.78 | 29.52 |
| KRG93807 | Soybean | mitochondrion, nucleus | 30.28 | 29.31 |
| CDY47587 | Canola | nucleus | 13.49 | 28.96 |
| CDY16093 | Canola | cytosol | 24.68 | 28.2 |
| KRH63067 | Soybean | cytosol, golgi, mitochondrion, nucleus | 24.17 | 28.19 |
| Bra026900.1-P | Field mustard | cytosol | 27.99 | 28.06 |
| CDY26655 | Canola | cytosol | 27.99 | 28.06 |
| CDY15029 | Canola | cytosol, mitochondrion | 29.77 | 27.59 |
| CDY16095 | Canola | cytosol | 27.48 | 27.48 |
| AT1G61600.1 | Thale cress | cytosol | 29.26 | 27.32 |
| Bra038594.1-P | Field mustard | nucleus | 29.52 | 24.63 |
| CDY26357 | Canola | mitochondrion | 29.52 | 24.63 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G191600.1 | EnsemblPlantsGene:TraesCS4D01G191600 | InterPro:DUF1262 | PANTHER:PTHR31050 | PANTHER:PTHR31050:SF0 | PFAM:PF06880 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr4D:-:335035757..335036938
Molecular Weight (calculated)
43950.8 Da
IEP (calculated)
8.380
GRAVY (calculated)
-0.499
Length
393 amino acids
Sequence
(BLAST)
(BLAST)
001: MQIKLGRHTQ ESDNQGAMYA TKPLSLFMSH PEAASRPPPD GRNSGYLVVK GDDDAGDDET CCWGQCGGTR VRDLPFPQNR VLTLRYTEHH GQSSTTYTDS
101: VIFVPVPDQP VASNRYYAVV ASGKRKGLVR TCSREEDMTP CCFCRCINDV KPQPFDPADL YQQIEIVQRR RGRFTAKAVA ADGFPNYLYR KKYWRVYASK
201: PTKNRLDLGD APGLNVALRS RQLADASLLV ASPAATAVST AVGKWYCPFY LIKEDGVSSS EQMDRAAFYE VALEQRWEPV QQTDNGSKLY SSKVLIGGSL
301: EARQEVSSGA SRHGDGYVWF RAAAGQSVGV CASVWERLRW EEYRGGWVDE EEEAEKVAGR SVLVERFVVK RMDRTVVVAF DFVHLNKVRG KQA
101: VIFVPVPDQP VASNRYYAVV ASGKRKGLVR TCSREEDMTP CCFCRCINDV KPQPFDPADL YQQIEIVQRR RGRFTAKAVA ADGFPNYLYR KKYWRVYASK
201: PTKNRLDLGD APGLNVALRS RQLADASLLV ASPAATAVST AVGKWYCPFY LIKEDGVSSS EQMDRAAFYE VALEQRWEPV QQTDNGSKLY SSKVLIGGSL
301: EARQEVSSGA SRHGDGYVWF RAAAGQSVGV CASVWERLRW EEYRGGWVDE EEEAEKVAGR SVLVERFVVK RMDRTVVVAF DFVHLNKVRG KQA
001: MYVTRHLSEY QRNSSDLTRS LPEGPNSGVL VIQDEESKPT CCFGNCYDGE LKGLPFPQNA KLTVTYRTGT GNDRRSYHDQ VLFIPVLDQP YYSNRYYVIK
101: RRGKQSGGAS ASAKEEDRVP CCFCFSYVPE VKPQEADPYD IYQQFEVHQR KPSSGYYTAT SVAPNGIPPE FLKRKYWTVE YSNSQDFGLT DDAKGINTTL
201: RSKLPNDMNT SVVVGKWYVP FIFVKERDAK DQIKSSPYYS MTLKQRWEEV YSCVNVNYNQ KGGEVVVDVD VETQVVKLEG QETISRETSG GGFVWFSVLG
301: DERQDKKIGL GSVVVERMKW EEERFGWLNN GERSNIKRSE RFEGGSSHWK SYRCLVLIES FELKRMDGSL VLTYEFTHVD KLKSKWD
101: RRGKQSGGAS ASAKEEDRVP CCFCFSYVPE VKPQEADPYD IYQQFEVHQR KPSSGYYTAT SVAPNGIPPE FLKRKYWTVE YSNSQDFGLT DDAKGINTTL
201: RSKLPNDMNT SVVVGKWYVP FIFVKERDAK DQIKSSPYYS MTLKQRWEEV YSCVNVNYNQ KGGEVVVDVD VETQVVKLEG QETISRETSG GGFVWFSVLG
301: DERQDKKIGL GSVVVERMKW EEERFGWLNN GERSNIKRSE RFEGGSSHWK SYRCLVLIES FELKRMDGSL VLTYEFTHVD KLKSKWD
Arabidopsis Description
At1g13520 [Source:UniProtKB/TrEMBL;Acc:Q6NNH1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.