CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79848
CDX79851
CDX89437
CDY03368
CDY15651
CDY50821

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13520.1	CDX79848	AT2G42790.1	21798944
AT1G13520.1	CDX79851	AT2G42790.1	21798944
AT1G13520.1	CDY15651	AT2G42790.1	21798944
AT1G13520.1	CDY50821	AT2G42790.1	21798944
AT1G13520.1	CDX89437	AT4G25200.1	21798944
AT1G13520.1	CDY03368	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21099	Canola	cytosol	91.99	92.71
CDY21100	Canola	cytosol	87.08	87.31
Bra016728.1-P	Field mustard	cytosol	85.79	86.01
CDY50165	Canola	cytosol	81.14	81.98
AT1G13520.1	Thale cress	cytosol	76.23	76.23
CDY26654	Canola	cytosol	66.93	68.16
CDY16094	Canola	cytosol	66.41	67.63
CDY26653	Canola	cytosol	59.43	64.61
CDY30029	Canola	cytosol	61.76	62.73
CDY16092	Canola	cytosol	45.74	62.32
CDX98103	Canola	cytosol	59.17	61.89
CDY21101	Canola	cytosol, mitochondrion	58.4	58.25
CDY50164	Canola	cytosol	58.4	58.25
CDY26655	Canola	cytosol	52.71	52.04
CDY16095	Canola	cytosol	52.2	51.4
CDY16093	Canola	cytosol	42.38	47.67
VIT_01s0011g02320.t01	Wine grape	cytosol	41.6	41.18
KRH71102	Soybean	cytosol	40.31	40.84
PGSC0003DMT400019462	Potato	cytosol	41.34	40.51
KRH71091	Soybean	cytosol	40.31	39.39
Solyc05g010460.2.1	Tomato	cytosol, nucleus, peroxisome	39.79	38.79
Solyc05g010470.2.1	Tomato	cytosol	31.52	38.61
KRH63067	Soybean	cytosol, golgi, mitochondrion, nucleus	33.07	37.98
VIT_01s0011g02330.t01	Wine grape	cytosol, mitochondrion	38.76	37.97
PGSC0003DMT400019458	Potato	cytosol	33.07	37.87
GSMUA_Achr5P27360_001	Banana	mitochondrion	37.47	37.76
GSMUA_Achr5P27350_001	Banana	mitochondrion	37.21	37.11
GSMUA_Achr3P06220_001	Banana	cytosol	36.69	37.08
PGSC0003DMT400059315	Potato	cytosol	26.61	36.92
Os08t0413500-00	Rice	cytosol, plasma membrane	37.98	36.12
Os08t0413200-00	Rice	cytosol	39.02	35.87
Os08t0413100-00	Rice	cytosol, plasma membrane	38.24	35.66
Zm00001d050302_P001	Maize	cytosol, plastid	34.37	35.47
Os08t0412700-01	Rice	cytosol, plasma membrane	34.37	35.19
GSMUA_Achr9P18410_001	Banana	cytosol	34.63	35.08
OQU80420	Sorghum	cytosol	33.59	35.04
CDY15029	Canola	cytosol, mitochondrion	38.24	34.91
TraesCS4D01G191600.1	Wheat	cytosol	33.07	32.57
TraesCS7D01G441700.1	Wheat	cytosol	37.98	32.24
Os08t0412800-01	Rice	plasma membrane	32.04	32.21
TraesCS4B01G190200.1	Wheat	cytosol	32.82	32.07
EES09009	Sorghum	cytosol	36.69	32.05
TraesCS4A01G113900.1	Wheat	cytosol	32.3	31.89
CDY47587	Canola	nucleus	14.99	31.69
CDY48822	Canola	cytosol	17.05	31.43
CDY26357	Canola	mitochondrion	37.73	31.0

Protein Annotations

EnsemblPlants:CDY50167	EnsemblPlantsGene:GSBRNA2T00096084001	InterPro:DUF1262	PANTHER:PTHR31050	PANTHER:PTHR31050:SF2	PFAM:PF06880
ProteinID:CDY50167	ProteinID:CDY50167.1	SEG:seg	UniParc:UPI0004EDD527	UniProt:A0A078IJT2	MapMan:35.2

Description

BnaC08g15920DBnaC08g15920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IJT2]

Coordinates

chrLK032886:+:18877..20307

Molecular Weight (calculated)

43980.8 Da

IEP (calculated)

8.109

GRAVY (calculated)

-0.599

Length

387 amino acids

Sequence
(BLAST)

001: MLQGISRKHL SECQRYYSNL TQSEGPNSGV LVIQDEESKP TCCCGSCYDA KLKGLPFPQN AELSVIYSKG NGQSKHTVYD PVLFIPVPGQ PLSLNRYYII
101: KRRGKHSGGA SASAKEEDRV PCCFCFSYVP QAKPQEADPY DIYQQFEIHQ RPASSGRYTA TSVAPNGIPP PFLKRKYWTV GYSNSQDFGL TDDAKGINAE
201: LRSELPKDVN TSVVVGKWYV PFIFVKEGDA KDQIKNTTYY SMILKQRWEE VYSSSYNEEA SEVVVDVEVE TEVAKLGGEV TNLRNKRADG FVWFSVLRDE
301: RQDKKIGLGS VVVERIKREE ERFGWLNKGD EVRSSIKRSE RFEGGSSQWK SYKCYVLVES FELKRTDGSL VLTYEFTHVD KLKSKWV

Best Arabidopsis Sequence Match ( AT1G13520.1 )
(BLAST)

001: MYVTRHLSEY QRNSSDLTRS LPEGPNSGVL VIQDEESKPT CCFGNCYDGE LKGLPFPQNA KLTVTYRTGT GNDRRSYHDQ VLFIPVLDQP YYSNRYYVIK
101: RRGKQSGGAS ASAKEEDRVP CCFCFSYVPE VKPQEADPYD IYQQFEVHQR KPSSGYYTAT SVAPNGIPPE FLKRKYWTVE YSNSQDFGLT DDAKGINTTL
201: RSKLPNDMNT SVVVGKWYVP FIFVKERDAK DQIKSSPYYS MTLKQRWEEV YSCVNVNYNQ KGGEVVVDVD VETQVVKLEG QETISRETSG GGFVWFSVLG
301: DERQDKKIGL GSVVVERMKW EEERFGWLNN GERSNIKRSE RFEGGSSHWK SYRCLVLIES FELKRMDGSL VLTYEFTHVD KLKSKWD

Arabidopsis Description

At1g13520 [Source:UniProtKB/TrEMBL;Acc:Q6NNH1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.