Factsheet for Bra016728.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004720.1-P
Bra013872.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13520.1	Bra004720.1-P	AT2G42790.1	21798944
AT1G13520.1	Bra013872.1-P	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21100	Canola	cytosol	94.3	94.3
CDY21099	Canola	cytosol	90.67	91.15
CDY50167	Canola	cytosol	86.01	85.79
AT1G13520.1	Thale cress	cytosol	82.12	81.91
Bra026901.1-P	Field mustard	cytosol	70.98	72.11
Bra026902.1-P	Field mustard	cytosol	67.88	68.95
Bra019719.1-P	Field mustard	cytosol	62.95	63.78
Bra016727.1-P	Field mustard	cytosol	59.59	59.28
Bra026900.1-P	Field mustard	cytosol	54.4	53.57
VIT_01s0011g02320.t01	Wine grape	cytosol	45.08	44.5
PGSC0003DMT400019462	Potato	cytosol	44.56	43.54
KRH71102	Soybean	cytosol	42.49	42.93
KRH71091	Soybean	cytosol	43.52	42.42
KRH63067	Soybean	cytosol, golgi, mitochondrion, nucleus	36.53	41.84
VIT_01s0011g02330.t01	Wine grape	cytosol, mitochondrion	42.75	41.77
PGSC0003DMT400019458	Potato	cytosol	36.27	41.42
Solyc05g010460.2.1	Tomato	cytosol, nucleus, peroxisome	42.49	41.31
Solyc05g010470.2.1	Tomato	cytosol	32.9	40.19
PGSC0003DMT400059315	Potato	cytosol	27.98	38.71
GSMUA_Achr5P27360_001	Banana	mitochondrion	38.08	38.28
GSMUA_Achr3P06220_001	Banana	cytosol	37.82	38.12
GSMUA_Achr5P27350_001	Banana	mitochondrion	37.31	37.11
GSMUA_Achr9P18410_001	Banana	cytosol	35.75	36.13
Os08t0413500-00	Rice	cytosol, plasma membrane	37.82	35.87
Os08t0413200-00	Rice	cytosol	38.86	35.63
Zm00001d050302_P001	Maize	cytosol, plastid	34.46	35.47
Os08t0412700-01	Rice	cytosol, plasma membrane	34.72	35.45
OQU80420	Sorghum	cytosol	33.68	35.04
Os08t0413100-00	Rice	cytosol, plasma membrane	36.79	34.22
TraesCS4D01G191600.1	Wheat	cytosol	33.42	32.82
Os08t0412800-01	Rice	plasma membrane	32.64	32.73
Bra038594.1-P	Field mustard	nucleus	39.64	32.48
TraesCS7D01G441700.1	Wheat	cytosol	38.34	32.46
TraesCS4B01G190200.1	Wheat	cytosol	33.16	32.32
EES09009	Sorghum	cytosol	37.05	32.28
TraesCS4A01G113900.1	Wheat	cytosol	32.64	32.14

Protein Annotations

EnsemblPlants:Bra016728.1	EnsemblPlants:Bra016728.1-P	EnsemblPlantsGene:Bra016728	InterPro:DUF1262	PANTHER:PTHR31050	PANTHER:PTHR31050:SF2
PFAM:PF06880	SEG:seg	UniParc:UPI0002545E62	UniProt:M4DJQ0	MapMan:35.2	:

Description

AT1G13520 (E=4e-183) | unknown protein

Coordinates

chrA08:+:19688736..19690168

Molecular Weight (calculated)

44324.1 Da

IEP (calculated)

6.989

GRAVY (calculated)

-0.642

Length

386 amino acids

Sequence
(BLAST)

001: MYVTRHLSEY QKNTSNLTQS LPEGPNSGVL VIQDEESKPT CCFGSCYDGE LKGLPFPQNA KLTVTYRTGT NDNRRSYHDP VLFIPVPGQP LSLNRYYVIK
101: RRGKHSGGAS ASAKEEDRVP CCFCFSYIPE AKPQEADPYD IYQQFEIHNR RASSGYYTAT SVAPNGIPPE FLKRKYWTVG YSNSQDFGLA DDAKGINDKL
201: RSELPKDMNT SVVVGKWYVP FIFVKEGDAK NQIKTSTYYR MTLKQRWEEV YSCSYNEEAS EVVVDVEVET EVVKLDGEVT NLRETRADGI VLFSVLRDER
301: QDMKIGLGSV VVERIKWEEE RFGWLNRGDE VRSRIKRSER FEGGSSQWKS YKCYVLVESF ELKRTDGSLV LTYEFTHVDK LKSKWV

Best Arabidopsis Sequence Match ( AT1G13520.1 )
(BLAST)

001: MYVTRHLSEY QRNSSDLTRS LPEGPNSGVL VIQDEESKPT CCFGNCYDGE LKGLPFPQNA KLTVTYRTGT GNDRRSYHDQ VLFIPVLDQP YYSNRYYVIK
101: RRGKQSGGAS ASAKEEDRVP CCFCFSYVPE VKPQEADPYD IYQQFEVHQR KPSSGYYTAT SVAPNGIPPE FLKRKYWTVE YSNSQDFGLT DDAKGINTTL
201: RSKLPNDMNT SVVVGKWYVP FIFVKERDAK DQIKSSPYYS MTLKQRWEEV YSCVNVNYNQ KGGEVVVDVD VETQVVKLEG QETISRETSG GGFVWFSVLG
301: DERQDKKIGL GSVVVERMKW EEERFGWLNN GERSNIKRSE RFEGGSSHWK SYRCLVLIES FELKRMDGSL VLTYEFTHVD KLKSKWD

Arabidopsis Description

At1g13520 [Source:UniProtKB/TrEMBL;Acc:Q6NNH1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.