Factsheet for Zm00001d050302_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d016248_P001
Zm00001d044874_P001
Zm00001d052194_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13520.1	Zm00001d016248_P001	AT2G42790.1	21798944
AT1G13520.1	Zm00001d044874_P001	AT4G25200.1	21798944
AT1G13520.1	Zm00001d052194_P001	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU80420	Sorghum	cytosol	83.2	84.1
Os08t0412700-01	Rice	cytosol, plasma membrane	74.13	73.55
TraesCS4D01G191600.1	Wheat	cytosol	71.2	67.94
TraesCS4A01G113900.1	Wheat	cytosol	70.67	67.6
TraesCS4B01G190200.1	Wheat	cytosol	70.93	67.17
GSMUA_Achr5P27350_001	Banana	mitochondrion	49.33	47.68
GSMUA_Achr5P27360_001	Banana	mitochondrion	48.53	47.4
GSMUA_Achr3P06220_001	Banana	cytosol	45.33	44.39
GSMUA_Achr9P18410_001	Banana	cytosol	40.0	39.27
VIT_01s0011g02320.t01	Wine grape	cytosol	40.53	38.87
Solyc05g010460.2.1	Tomato	cytosol, nucleus, peroxisome	39.2	37.03
PGSC0003DMT400019462	Potato	cytosol	38.4	36.46
Solyc05g010470.2.1	Tomato	cytosol	30.67	36.39
PGSC0003DMT400019458	Potato	cytosol	32.8	36.39
KRH71102	Soybean	cytosol	36.8	36.13
CDY26653	Canola	cytosol	33.6	35.39
Bra026901.1-P	Field mustard	cytosol	35.73	35.26
CDY16094	Canola	cytosol	35.73	35.26
CDY26654	Canola	cytosol	35.73	35.26
CDY50165	Canola	cytosol	36.0	35.25
VIT_01s0011g02330.t01	Wine grape	cytosol, mitochondrion	37.07	35.19
Bra026902.1-P	Field mustard	cytosol	34.93	34.47
Bra016728.1-P	Field mustard	cytosol	35.47	34.46
CDY21099	Canola	cytosol	35.2	34.38
CDY50167	Canola	cytosol	35.47	34.37
CDY21100	Canola	cytosol	35.2	34.2
AT1G13520.1	Thale cress	cytosol	34.93	33.85
CDX98103	Canola	cytosol	33.33	33.78
AT1G13530.1	Thale cress	cytosol	34.67	33.77
AT1G13490.2	Thale cress	cytosol	34.13	33.51
AT1G13480.1	Thale cress	nucleus	34.4	33.33
AT1G13470.1	Thale cress	cytosol	33.6	33.25
PGSC0003DMT400026205	Potato	mitochondrion	35.2	33.17
Solyc02g089650.2.1	Tomato	mitochondrion	35.2	33.17
AT1G13510.1	Thale cress	cytosol	33.6	33.16
Bra019719.1-P	Field mustard	cytosol	33.6	33.07
CDY30029	Canola	cytosol	33.07	32.55
KRH71091	Soybean	cytosol	34.13	32.32
AT1G13540.1	Thale cress	cytosol	32.8	32.28
PGSC0003DMT400059315	Potato	cytosol	23.73	31.9
AT1G13550.1	Thale cress	cytosol	32.8	31.7
AT1G13500.1	Thale cress	cytosol	32.53	31.61
CDY50164	Canola	cytosol	32.53	31.44
KRG93807	Soybean	mitochondrion, nucleus	33.6	31.03
CDY16092	Canola	cytosol	23.47	30.99
CDY21101	Canola	cytosol, mitochondrion	32.0	30.93
Bra016727.1-P	Field mustard	cytosol	31.73	30.67
CDY47587	Canola	nucleus	14.67	30.05
CDY15029	Canola	cytosol, mitochondrion	33.6	29.72
KRH63067	Soybean	cytosol, golgi, mitochondrion, nucleus	26.13	29.08
CDY48822	Canola	cytosol	16.27	29.05
AT1G61600.1	Thale cress	cytosol	32.53	28.98
CDY16093	Canola	cytosol	26.4	28.78
Bra026900.1-P	Field mustard	cytosol	29.87	28.57
CDY26655	Canola	cytosol	29.87	28.57
CDY16095	Canola	cytosol	29.33	27.99
Bra038594.1-P	Field mustard	nucleus	33.07	26.33
CDY26357	Canola	mitochondrion	33.07	26.33

Protein Annotations

EnsemblPlants:Zm00001d050302_P001	EnsemblPlants:Zm00001d050302_T001	EnsemblPlantsGene:Zm00001d050302	EntrezGene:103653430	InterPro:DUF1262	ncoils:Coil
PANTHER:PTHR31050	PANTHER:PTHR31050:SF0	PFAM:PF06880	ProteinID:AQK52279.1	UniParc:UPI0002217495	UniProt:K7TZM5
MapMan:35.2	:	:	:	:	:

Description

DUF1262 family protein

Coordinates

chr4:+:80005891..80007018

Molecular Weight (calculated)

41852.4 Da

IEP (calculated)

8.301

GRAVY (calculated)

-0.476

Length

375 amino acids

Sequence
(BLAST)

001: MYATKPLSLF KSHPEAASRP PPEGRNSGYL VVKGADDEGG DDETCCWGTC GGSRVRELPF PQNRVLTVRY TEHHGESSST YADAVVFVPV PDQPLASNRY
101: YPVIATGKHK GLVRACSTEE DMVQCCFCRC ISDVDPRPFD PADIYQQVEI VQRRRGRFTA RAVAPDGFPY FLYRKKYWRV YASKPKNFDL GEARGLDAAL
201: RSRQLSDAAS VLDAFPAPAR SAVGKWYSPF FLVKEDGVAP PREQMERSAF YEVTLEQRWW EPGHATAGGP KLDSRRALIG GSVEAKQEAA SSRHGDAYVW
301: FRAPATGQRV GLCASVWERM RWEEYRGGWV DEGEDPGKVG GGSVLVERFV VKRLDGTVVV AFDFVHLNKV RAKQL

Best Arabidopsis Sequence Match ( AT1G13520.1 )
(BLAST)

001: MYVTRHLSEY QRNSSDLTRS LPEGPNSGVL VIQDEESKPT CCFGNCYDGE LKGLPFPQNA KLTVTYRTGT GNDRRSYHDQ VLFIPVLDQP YYSNRYYVIK
101: RRGKQSGGAS ASAKEEDRVP CCFCFSYVPE VKPQEADPYD IYQQFEVHQR KPSSGYYTAT SVAPNGIPPE FLKRKYWTVE YSNSQDFGLT DDAKGINTTL
201: RSKLPNDMNT SVVVGKWYVP FIFVKERDAK DQIKSSPYYS MTLKQRWEEV YSCVNVNYNQ KGGEVVVDVD VETQVVKLEG QETISRETSG GGFVWFSVLG
301: DERQDKKIGL GSVVVERMKW EEERFGWLNN GERSNIKRSE RFEGGSSHWK SYRCLVLIES FELKRMDGSL VLTYEFTHVD KLKSKWD

Arabidopsis Description

At1g13520 [Source:UniProtKB/TrEMBL;Acc:Q6NNH1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.