Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016728.1-P | Field mustard | cytosol | 94.3 | 94.3 |
| CDY21099 | Canola | cytosol | 89.38 | 89.84 |
| CDY50165 | Canola | cytosol | 87.82 | 88.51 |
| CDY50167 | Canola | cytosol | 87.31 | 87.08 |
| AT1G13520.1 | Thale cress | cytosol | 81.61 | 81.4 |
| CDY26654 | Canola | cytosol | 71.5 | 72.63 |
| CDY16094 | Canola | cytosol | 71.24 | 72.37 |
| CDY26653 | Canola | cytosol | 64.51 | 69.94 |
| CDY30029 | Canola | cytosol | 64.25 | 65.09 |
| CDY16092 | Canola | cytosol | 47.15 | 64.08 |
| CDX98103 | Canola | cytosol | 61.4 | 64.05 |
| CDY50164 | Canola | cytosol | 61.66 | 61.34 |
| CDY21101 | Canola | cytosol, mitochondrion | 60.88 | 60.57 |
| CDY26655 | Canola | cytosol | 55.44 | 54.59 |
| CDY16095 | Canola | cytosol | 55.44 | 54.45 |
| CDY16093 | Canola | cytosol | 44.82 | 50.29 |
| VIT_01s0011g02320.t01 | Wine grape | cytosol | 45.08 | 44.5 |
| PGSC0003DMT400019462 | Potato | cytosol | 44.56 | 43.54 |
| KRH71102 | Soybean | cytosol | 42.75 | 43.19 |
| KRH71091 | Soybean | cytosol | 43.26 | 42.17 |
| Solyc05g010460.2.1 | Tomato | cytosol, nucleus, peroxisome | 43.26 | 42.07 |
| VIT_01s0011g02330.t01 | Wine grape | cytosol, mitochondrion | 43.01 | 42.03 |
| PGSC0003DMT400019458 | Potato | cytosol | 36.53 | 41.72 |
| KRH63067 | Soybean | cytosol, golgi, mitochondrion, nucleus | 36.01 | 41.25 |
| Solyc05g010470.2.1 | Tomato | cytosol | 32.9 | 40.19 |
| PGSC0003DMT400059315 | Potato | cytosol | 28.5 | 39.43 |
| GSMUA_Achr5P27360_001 | Banana | mitochondrion | 39.12 | 39.32 |
| GSMUA_Achr3P06220_001 | Banana | cytosol | 38.08 | 38.38 |
| GSMUA_Achr5P27350_001 | Banana | mitochondrion | 38.34 | 38.14 |
| Os08t0413500-00 | Rice | cytosol, plasma membrane | 39.12 | 37.1 |
| GSMUA_Achr9P18410_001 | Banana | cytosol | 36.53 | 36.91 |
| Os08t0413200-00 | Rice | cytosol | 40.16 | 36.82 |
| CDY15029 | Canola | cytosol, mitochondrion | 39.9 | 36.32 |
| Os08t0413100-00 | Rice | cytosol, plasma membrane | 38.34 | 35.66 |
| Os08t0412700-01 | Rice | cytosol, plasma membrane | 34.72 | 35.45 |
| Zm00001d050302_P001 | Maize | cytosol, plastid | 34.2 | 35.2 |
| OQU80420 | Sorghum | cytosol | 33.68 | 35.04 |
| CDY48822 | Canola | cytosol | 18.39 | 33.81 |
| TraesCS7D01G441700.1 | Wheat | cytosol | 39.38 | 33.33 |
| TraesCS4D01G191600.1 | Wheat | cytosol | 33.42 | 32.82 |
| TraesCS4B01G190200.1 | Wheat | cytosol | 33.16 | 32.32 |
| CDY26357 | Canola | mitochondrion | 39.38 | 32.27 |
| Os08t0412800-01 | Rice | plasma membrane | 32.12 | 32.21 |
| TraesCS4A01G113900.1 | Wheat | cytosol | 32.64 | 32.14 |
| EES09009 | Sorghum | cytosol | 36.79 | 32.05 |
| CDY47587 | Canola | nucleus | 15.03 | 31.69 |
Protein Annotations
| EnsemblPlants:CDY21100 | EnsemblPlantsGene:GSBRNA2T00015277001 | InterPro:DUF1262 | PANTHER:PTHR31050 | PANTHER:PTHR31050:SF2 | PFAM:PF06880 |
| ProteinID:CDY21100 | ProteinID:CDY21100.1 | SEG:seg | UniParc:UPI0004EEC751 | UniProt:A0A078G3Q2 | MapMan:35.2 |
Description
BnaA08g24250DBnaA08g24250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G3Q2]
Coordinates
chrLK032115:-:668934..670368
Molecular Weight (calculated)
44183.9 Da
IEP (calculated)
7.356
GRAVY (calculated)
-0.630
Length
386 amino acids
Sequence
(BLAST)
(BLAST)
001: MYVTRHLSEY QKNTSNLTQS LPEGPNSGVL VIQDEESKPT CCFGSCYDGE LKGLPFPQNA KLTVTYRTGT NDNRRSYHDP VLFIPVPGQP LSLNRYYVIR
101: RRGTHSGGAS ASAKEEDRVP CCFCFSYVPE AKPQEADPYD IYQQFEIHQR PTSSGRYTAT SVAPNGIPPP FLKRKYWTVG YSNSQDFGLT DDAKGINAEL
201: RSELPKDVNT SVVVGKWYVP FIFVKEGDAK NQIKTSTYYR MTLKQRWEEV YSCSYNEEAS EVVVDVEVET EVVKLDGEVT NLRETRADGV VWFSVLRDER
301: QDKKIGLGSV VVERIKWEEE RFGWLNKGDG VRSSIKRSER FEGGSSNWKS YKCYVLVESF ELKRMDASLV LTYEFRHVDK LKSKWV
101: RRGTHSGGAS ASAKEEDRVP CCFCFSYVPE AKPQEADPYD IYQQFEIHQR PTSSGRYTAT SVAPNGIPPP FLKRKYWTVG YSNSQDFGLT DDAKGINAEL
201: RSELPKDVNT SVVVGKWYVP FIFVKEGDAK NQIKTSTYYR MTLKQRWEEV YSCSYNEEAS EVVVDVEVET EVVKLDGEVT NLRETRADGV VWFSVLRDER
301: QDKKIGLGSV VVERIKWEEE RFGWLNKGDG VRSSIKRSER FEGGSSNWKS YKCYVLVESF ELKRMDASLV LTYEFRHVDK LKSKWV
001: MYVTRHLSEY QRNSSDLTRS LPEGPNSGVL VIQDEESKPT CCFGNCYDGE LKGLPFPQNA KLTVTYRTGT GNDRRSYHDQ VLFIPVLDQP YYSNRYYVIK
101: RRGKQSGGAS ASAKEEDRVP CCFCFSYVPE VKPQEADPYD IYQQFEVHQR KPSSGYYTAT SVAPNGIPPE FLKRKYWTVE YSNSQDFGLT DDAKGINTTL
201: RSKLPNDMNT SVVVGKWYVP FIFVKERDAK DQIKSSPYYS MTLKQRWEEV YSCVNVNYNQ KGGEVVVDVD VETQVVKLEG QETISRETSG GGFVWFSVLG
301: DERQDKKIGL GSVVVERMKW EEERFGWLNN GERSNIKRSE RFEGGSSHWK SYRCLVLIES FELKRMDGSL VLTYEFTHVD KLKSKWD
101: RRGKQSGGAS ASAKEEDRVP CCFCFSYVPE VKPQEADPYD IYQQFEVHQR KPSSGYYTAT SVAPNGIPPE FLKRKYWTVE YSNSQDFGLT DDAKGINTTL
201: RSKLPNDMNT SVVVGKWYVP FIFVKERDAK DQIKSSPYYS MTLKQRWEEV YSCVNVNYNQ KGGEVVVDVD VETQVVKLEG QETISRETSG GGFVWFSVLG
301: DERQDKKIGL GSVVVERMKW EEERFGWLNN GERSNIKRSE RFEGGSSHWK SYRCLVLIES FELKRMDGSL VLTYEFTHVD KLKSKWD
Arabidopsis Description
At1g13520 [Source:UniProtKB/TrEMBL;Acc:Q6NNH1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.