CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47587	Canola	nucleus	57.62	66.12
CDY15029	Canola	cytosol, mitochondrion	67.14	33.25
AT1G61600.1	Thale cress	cytosol	65.71	32.78
CDY26357	Canola	mitochondrion	68.1	30.36
CDY26653	Canola	cytosol	35.24	20.79
KRG93807	Soybean	mitochondrion, nucleus	39.05	20.2
CDY26654	Canola	cytosol	36.19	20.0
CDY16094	Canola	cytosol	35.71	19.74
CDX98103	Canola	cytosol	33.33	18.92
CDY50164	Canola	cytosol	34.76	18.81
CDY21101	Canola	cytosol, mitochondrion	34.76	18.81
CDY16092	Canola	cytosol	25.24	18.66
CDY30029	Canola	cytosol	33.81	18.64
GSMUA_Achr9P18410_001	Banana	cytosol	33.81	18.59
CDY21100	Canola	cytosol	33.81	18.39
CDY50165	Canola	cytosol	33.33	18.28
CDY21099	Canola	cytosol	33.33	18.23
Solyc02g089650.2.1	Tomato	mitochondrion	34.29	18.09
PGSC0003DMT400026205	Potato	mitochondrion	33.81	17.84
CDY26655	Canola	cytosol	32.86	17.6
CDY16095	Canola	cytosol	32.38	17.3
CDY50167	Canola	cytosol	31.43	17.05
GSMUA_Achr5P27360_001	Banana	mitochondrion	30.48	16.67
GSMUA_Achr3P06220_001	Banana	cytosol	30.0	16.45
Zm00001d050302_P001	Maize	cytosol, plastid	29.05	16.27
GSMUA_Achr5P27350_001	Banana	mitochondrion	30.0	16.24
TraesCS4A01G113900.1	Wheat	cytosol	29.52	15.82
TraesCS4D01G191600.1	Wheat	cytosol	29.52	15.78
Os08t0412700-01	Rice	cytosol, plasma membrane	28.1	15.61
TraesCS4B01G190200.1	Wheat	cytosol	29.05	15.4
Os08t0412800-01	Rice	plasma membrane	28.1	15.32
Os08t0413500-00	Rice	cytosol, plasma membrane	29.52	15.23
OQU80420	Sorghum	cytosol	26.67	15.09
Os08t0413200-00	Rice	cytosol	30.0	14.96
Os08t0413100-00	Rice	cytosol, plasma membrane	28.57	14.46
EES09009	Sorghum	cytosol	28.57	13.54
CDY16093	Canola	cytosol	21.43	13.08
TraesCS7D01G441700.1	Wheat	cytosol	26.67	12.28

Protein Annotations

EnsemblPlants:CDY48822	EnsemblPlantsGene:GSBRNA2T00091844001	InterPro:DUF1262	PANTHER:PTHR31050	PANTHER:PTHR31050:SF3	PFAM:PF06880
ProteinID:CDY48822	ProteinID:CDY48822.1	UniParc:UPI0004EDE5BB	UniProt:A0A078IFP0	MapMan:35.2	:

Description

BnaC01g43300DBnaC01g43300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IFP0]

Coordinates

chrLK032795:+:5269..6133

Molecular Weight (calculated)

24269.4 Da

IEP (calculated)

10.226

GRAVY (calculated)

-0.492

Length

210 amino acids

Sequence
(BLAST)

001: MYVTDEDIVA VQKIPEDALR GVTGRSILGR SSYHRRRSRI DDTFCFGMCK GTKIEMLPFP QDKILSVVHT DSSGNRDTSV KKVFFILKKP KPLDPRNIYQ
101: TVKINRRHDH TFFAKSVAPD GTPPLFLKKK GWELPTSRSL HPRGPRETLG LNDDLRARLP EFGFSVSTIW SGSVIEGEWY CPFMFVKENC SVSHQMKKSM
201: FYRMTLSQYW

Best Arabidopsis Sequence Match ( AT1G61600.1 )
(BLAST)

001: MYVTRTLSQF RKYQKTLSEE SPEGPFSGVL VITDEEAETE DTFCFGMCTR TKIEKLPLPQ DKILSVVHLD SSGNRETSVK KVLFIPALDQ PLSSNRYYVV
101: HARGRHKGKV SVCSREIEKG VCCFPDILHD KKPKPLDPRN IYQTVKINRH HDRTFYAKSV APDGTPPTFL KKKGWELRTS RSLHPRRPRE ALGLDEELRA
201: RLPAFGFPVS TIRSGSVIVG EWYCPFMFVK ENCSVSQQMR KSMFYRITLS QYWERIYHCG NNDLDENNDE NEEEVVRVEA NVVREANYVK GMEAVKGEKE
301: GHGGFYWYRQ VQGPRGPGER RRKTGLRSPV GLSFVVVERM RRVMEEGGWV GGGRKVVRVE RDEPIRVCRR DGRNMNGNND RNWRRFGCYV LVESFGLRRA
401: DGVLLVKCVF RHTNRLRCNW E

Arabidopsis Description

DUF1262 family protein (DUF1262) [Source:UniProtKB/TrEMBL;Acc:Q9SY90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.