Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os08t0413100-00 | Rice | cytosol, plasma membrane | 49.34 | 54.22 |
| Os08t0413200-00 | Rice | cytosol | 48.9 | 52.97 |
| Os08t0413500-00 | Rice | cytosol, plasma membrane | 46.71 | 52.33 |
| EES09009 | Sorghum | cytosol | 50.44 | 51.92 |
| GSMUA_Achr3P06220_001 | Banana | cytosol | 36.4 | 43.34 |
| GSMUA_Achr5P27350_001 | Banana | mitochondrion | 36.4 | 42.78 |
| GSMUA_Achr5P27360_001 | Banana | mitochondrion | 35.75 | 42.45 |
| KRH71102 | Soybean | cytosol | 33.99 | 40.58 |
| Bra026902.1-P | Field mustard | cytosol | 32.89 | 39.47 |
| CDY16092 | Canola | cytosol | 24.56 | 39.44 |
| CDY21100 | Canola | cytosol | 33.33 | 39.38 |
| CDY26654 | Canola | cytosol | 32.68 | 39.21 |
| Bra026901.1-P | Field mustard | cytosol | 32.68 | 39.21 |
| CDY16094 | Canola | cytosol | 32.68 | 39.21 |
| CDY21099 | Canola | cytosol | 32.89 | 39.06 |
| AT1G13520.1 | Thale cress | cytosol | 33.11 | 39.02 |
| CDY26653 | Canola | cytosol | 30.04 | 38.48 |
| CDY50165 | Canola | cytosol | 32.24 | 38.38 |
| Bra016728.1-P | Field mustard | cytosol | 32.46 | 38.34 |
| AT1G13510.1 | Thale cress | cytosol | 31.8 | 38.16 |
| CDY50167 | Canola | cytosol | 32.24 | 37.98 |
| VIT_01s0011g02330.t01 | Wine grape | cytosol, mitochondrion | 32.89 | 37.97 |
| AT1G13530.1 | Thale cress | cytosol | 32.02 | 37.92 |
| CDY50164 | Canola | cytosol | 32.24 | 37.89 |
| CDX98103 | Canola | cytosol | 30.7 | 37.84 |
| AT1G13540.1 | Thale cress | cytosol | 31.58 | 37.8 |
| Solyc05g010470.2.1 | Tomato | cytosol | 26.1 | 37.66 |
| CDY21101 | Canola | cytosol, mitochondrion | 32.02 | 37.63 |
| Bra016727.1-P | Field mustard | cytosol | 32.02 | 37.63 |
| VIT_01s0011g02320.t01 | Wine grape | cytosol | 32.24 | 37.6 |
| AT1G13490.2 | Thale cress | cytosol | 31.36 | 37.43 |
| KRH71091 | Soybean | cytosol | 32.46 | 37.37 |
| Bra019719.1-P | Field mustard | cytosol | 30.92 | 37.01 |
| GSMUA_Achr9P18410_001 | Banana | cytosol | 30.92 | 36.91 |
| KRH63067 | Soybean | cytosol, golgi, mitochondrion, nucleus | 27.19 | 36.8 |
| PGSC0003DMT400019462 | Potato | cytosol | 31.8 | 36.71 |
| AT1G13500.1 | Thale cress | cytosol | 30.92 | 36.53 |
| AT1G13470.1 | Thale cress | cytosol | 30.26 | 36.41 |
| CDY30029 | Canola | cytosol | 30.26 | 36.22 |
| AT1G13480.1 | Thale cress | nucleus | 30.7 | 36.18 |
| Solyc05g010460.2.1 | Tomato | cytosol, nucleus, peroxisome | 31.36 | 36.02 |
| PGSC0003DMT400059315 | Potato | cytosol | 21.93 | 35.84 |
| PGSC0003DMT400019458 | Potato | cytosol | 26.54 | 35.8 |
| TraesCS4D01G191600.1 | Wheat | cytosol | 30.48 | 35.37 |
| AT1G13550.1 | Thale cress | cytosol | 28.95 | 34.02 |
| KRG93807 | Soybean | mitochondrion, nucleus | 29.82 | 33.5 |
| AT1G61600.1 | Thale cress | cytosol | 30.92 | 33.49 |
| CDY15029 | Canola | cytosol, mitochondrion | 30.92 | 33.25 |
| PGSC0003DMT400026205 | Potato | mitochondrion | 28.51 | 32.66 |
| Solyc02g089650.2.1 | Tomato | mitochondrion | 28.07 | 32.16 |
| CDY26655 | Canola | cytosol | 26.75 | 31.12 |
| Bra026900.1-P | Field mustard | cytosol | 26.75 | 31.12 |
| CDY16095 | Canola | cytosol | 26.54 | 30.79 |
| Bra038594.1-P | Field mustard | nucleus | 30.26 | 29.3 |
| CDY26357 | Canola | mitochondrion | 30.26 | 29.3 |
| CDY16093 | Canola | cytosol | 21.27 | 28.2 |
| CDY47587 | Canola | nucleus | 10.96 | 27.32 |
| CDY48822 | Canola | cytosol | 12.28 | 26.67 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G441700.1 | EnsemblPlantsGene:TraesCS7D01G441700 | InterPro:DUF1262 | PANTHER:PTHR31050 | PANTHER:PTHR31050:SF3 | PFAM:PF06880 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr7D:-:560935010..560941428
Molecular Weight (calculated)
50645.6 Da
IEP (calculated)
8.775
GRAVY (calculated)
-0.243
Length
456 amino acids
Sequence
(BLAST)
(BLAST)
001: MYVTRPLSWY QADASAAAEV PPEGPGSGFL VVVDETGETA RTHFWGLCVD REMRGLPFPQ NRQLALRPSS GSDPIESVAT AVDVVGAIAD FATSSMPGRA
101: PGLSKGPKMP DYTMLVPVVG QPLSSGRYYV VRADGKHRGK VSACSKEEDK TDLRWLGSYV NDVKPRAFDR SDLYQQVEVQ QLPSNAFKAV AVAADGIPPH
201: FLSSKSVLYP YPKSVCTLLY TLVCRTKSSI SNSFIQLSLR KKGWKVNTMV SPKYQLTDDA QGVDSTLCCR MPDLGSLSIA ERSSPAVVVG RWYVSFIFVK
301: ADGGRSLKDQ FRRCTFYEMT MEQSWEQIYS HDNPGSKPAE VVVTATVRRS TALLDGASVV PQEVGGVVWF GSAVCLDMVV WERMKWELER GGWVAPGPGN
401: GNEERVERVD RRDRLGQWHR FACYVLVERF VLKRMDGSLA LTCVFRHTDK IKTKWL
101: PGLSKGPKMP DYTMLVPVVG QPLSSGRYYV VRADGKHRGK VSACSKEEDK TDLRWLGSYV NDVKPRAFDR SDLYQQVEVQ QLPSNAFKAV AVAADGIPPH
201: FLSSKSVLYP YPKSVCTLLY TLVCRTKSSI SNSFIQLSLR KKGWKVNTMV SPKYQLTDDA QGVDSTLCCR MPDLGSLSIA ERSSPAVVVG RWYVSFIFVK
301: ADGGRSLKDQ FRRCTFYEMT MEQSWEQIYS HDNPGSKPAE VVVTATVRRS TALLDGASVV PQEVGGVVWF GSAVCLDMVV WERMKWELER GGWVAPGPGN
401: GNEERVERVD RRDRLGQWHR FACYVLVERF VLKRMDGSLA LTCVFRHTDK IKTKWL
001: MYVTRHLSEY QRNSSDLTRS LPEGPNSGVL VIQDEESKPT CCFGNCYDGE LKGLPFPQNA KLTVTYRTGT GNDRRSYHDQ VLFIPVLDQP YYSNRYYVIK
101: RRGKQSGGAS ASAKEEDRVP CCFCFSYVPE VKPQEADPYD IYQQFEVHQR KPSSGYYTAT SVAPNGIPPE FLKRKYWTVE YSNSQDFGLT DDAKGINTTL
201: RSKLPNDMNT SVVVGKWYVP FIFVKERDAK DQIKSSPYYS MTLKQRWEEV YSCVNVNYNQ KGGEVVVDVD VETQVVKLEG QETISRETSG GGFVWFSVLG
301: DERQDKKIGL GSVVVERMKW EEERFGWLNN GERSNIKRSE RFEGGSSHWK SYRCLVLIES FELKRMDGSL VLTYEFTHVD KLKSKWD
101: RRGKQSGGAS ASAKEEDRVP CCFCFSYVPE VKPQEADPYD IYQQFEVHQR KPSSGYYTAT SVAPNGIPPE FLKRKYWTVE YSNSQDFGLT DDAKGINTTL
201: RSKLPNDMNT SVVVGKWYVP FIFVKERDAK DQIKSSPYYS MTLKQRWEEV YSCVNVNYNQ KGGEVVVDVD VETQVVKLEG QETISRETSG GGFVWFSVLG
301: DERQDKKIGL GSVVVERMKW EEERFGWLNN GERSNIKRSE RFEGGSSHWK SYRCLVLIES FELKRMDGSL VLTYEFTHVD KLKSKWD
Arabidopsis Description
At1g13520 [Source:UniProtKB/TrEMBL;Acc:Q6NNH1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.