Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G13540.1 | Thale cress | cytosol | 82.89 | 82.68 |
| CDY50164 | Canola | cytosol | 75.26 | 73.71 |
| Bra016727.1-P | Field mustard | cytosol | 75.0 | 73.45 |
| CDY21101 | Canola | cytosol, mitochondrion | 74.47 | 72.94 |
| AT1G13520.1 | Thale cress | cytosol | 63.16 | 62.02 |
| AT1G13470.1 | Thale cress | cytosol | 60.0 | 60.16 |
| AT1G13480.1 | Thale cress | nucleus | 58.68 | 57.62 |
| AT1G13530.1 | Thale cress | cytosol | 57.37 | 56.62 |
| AT1G13490.2 | Thale cress | cytosol | 56.05 | 55.76 |
| AT1G13550.1 | Thale cress | cytosol | 56.58 | 55.41 |
| AT1G13500.1 | Thale cress | cytosol | 56.05 | 55.18 |
| PGSC0003DMT400019462 | Potato | cytosol | 47.63 | 45.82 |
| PGSC0003DMT400019458 | Potato | cytosol | 40.53 | 45.56 |
| VIT_01s0011g02320.t01 | Wine grape | cytosol | 46.05 | 44.76 |
| Solyc05g010460.2.1 | Tomato | cytosol, nucleus, peroxisome | 46.05 | 44.08 |
| Solyc05g010470.2.1 | Tomato | cytosol | 36.05 | 43.35 |
| KRH71102 | Soybean | cytosol | 42.11 | 41.88 |
| KRH71091 | Soybean | cytosol | 42.89 | 41.16 |
| VIT_01s0011g02330.t01 | Wine grape | cytosol, mitochondrion | 42.63 | 41.01 |
| KRH63067 | Soybean | cytosol, golgi, mitochondrion, nucleus | 36.32 | 40.95 |
| PGSC0003DMT400059315 | Potato | cytosol | 29.21 | 39.78 |
| GSMUA_Achr5P27360_001 | Banana | mitochondrion | 38.16 | 37.76 |
| GSMUA_Achr5P27350_001 | Banana | mitochondrion | 37.63 | 36.86 |
| GSMUA_Achr3P06220_001 | Banana | cytosol | 35.26 | 34.99 |
| Os08t0412700-01 | Rice | cytosol, plasma membrane | 34.21 | 34.39 |
| GSMUA_Achr9P18410_001 | Banana | cytosol | 34.47 | 34.29 |
| Os08t0413200-00 | Rice | cytosol | 37.89 | 34.2 |
| AT1G61600.1 | Thale cress | cytosol | 37.63 | 33.97 |
| Zm00001d050302_P001 | Maize | cytosol, plastid | 33.16 | 33.6 |
| OQU80420 | Sorghum | cytosol | 32.37 | 33.15 |
| Os08t0412800-01 | Rice | plasma membrane | 32.89 | 32.47 |
| Os08t0413100-00 | Rice | cytosol, plasma membrane | 35.26 | 32.29 |
| TraesCS4B01G190200.1 | Wheat | cytosol | 33.16 | 31.82 |
| TraesCS7D01G441700.1 | Wheat | cytosol | 38.16 | 31.8 |
| TraesCS4D01G191600.1 | Wheat | cytosol | 32.63 | 31.55 |
| Os08t0413500-00 | Rice | cytosol, plasma membrane | 33.68 | 31.45 |
| TraesCS4A01G113900.1 | Wheat | cytosol | 32.37 | 31.38 |
| EES09009 | Sorghum | cytosol | 35.0 | 30.02 |
Protein Annotations
| ArrayExpress:AT1G13510 | EMBL:AY063984 | EMBL:AY096399 | EnsemblPlants:AT1G13510.1 | EnsemblPlantsGene:AT1G13510 | EntrezGene:837911 |
| GO:GO:0005575 | GO:GO:0008150 | InterPro:DUF1262 | PANTHER:PTHR31050 | PANTHER:PTHR31050:SF2 | PFAM:PF06880 |
| ProteinID:AEE29028.1 | RefSeq:AT1G13510 | RefSeq:AT1G13510-TAIR-G | RefSeq:NP_172808.1 | SEG:seg | TAIR:AT1G13510 |
| TAIR:AT1G13510.1 | Unigene:At.27119 | UniParc:UPI00000A4119 | UniProt:Q8VZN5 | MapMan:35.2 | : |
Description
Uncharacterized protein At1g13510 [Source:UniProtKB/TrEMBL;Acc:Q8VZN5]
Coordinates
chr1:-:4629203..4630821
Molecular Weight (calculated)
43740.1 Da
IEP (calculated)
6.098
GRAVY (calculated)
-0.501
Length
380 amino acids
Sequence
(BLAST)
(BLAST)
001: MYVTRCLSEY QRNPAELRQP PPEGPNSGIL VIQDQHSQTR PCCFGLCLVV DSYLSGLPLP QNLKLAARFN AGEDDATCDP VVFIPVLNKP LSSNCYYAIK
101: RVGKHSGEAP ASGKEEDRVP CCFCSSYVPE AKPKQLDPYD MYQQFMIHQK KPSSRYYYAT SVAPDGVSPW FLKKNKWTVE YSRFQDFELK DDAKGLNTEL
201: RTELPGLGMS VVVGKWYVPF IFVKERDVED QIKRSMYYSM TLEQRWEEVF SYEKDKSRNY DVLVDVELDT EVVKVDGQEI SRGVEANGFV WFAVGDKKIG
301: LGSVVVERMK WEEERFGWTG KGDNERSMVA KRLEKSTDGS LLKNRHCYVL VECFVLKRMD ESLVLTYEFT HVDKLKTKWD
101: RVGKHSGEAP ASGKEEDRVP CCFCSSYVPE AKPKQLDPYD MYQQFMIHQK KPSSRYYYAT SVAPDGVSPW FLKKNKWTVE YSRFQDFELK DDAKGLNTEL
201: RTELPGLGMS VVVGKWYVPF IFVKERDVED QIKRSMYYSM TLEQRWEEVF SYEKDKSRNY DVLVDVELDT EVVKVDGQEI SRGVEANGFV WFAVGDKKIG
301: LGSVVVERMK WEEERFGWTG KGDNERSMVA KRLEKSTDGS LLKNRHCYVL VECFVLKRMD ESLVLTYEFT HVDKLKTKWD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.