Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G13510.1 | Thale cress | cytosol | 82.68 | 82.89 |
| CDY50164 | Canola | cytosol | 78.74 | 77.32 |
| Bra016727.1-P | Field mustard | cytosol | 77.69 | 76.29 |
| CDY21101 | Canola | cytosol, mitochondrion | 77.43 | 76.03 |
| AT1G13520.1 | Thale cress | cytosol | 62.99 | 62.02 |
| AT1G13470.1 | Thale cress | cytosol | 60.1 | 60.42 |
| AT1G13480.1 | Thale cress | nucleus | 59.84 | 58.91 |
| AT1G13530.1 | Thale cress | cytosol | 58.79 | 58.18 |
| AT1G13490.2 | Thale cress | cytosol | 56.96 | 56.81 |
| AT1G13500.1 | Thale cress | cytosol | 57.22 | 56.48 |
| AT1G13550.1 | Thale cress | cytosol | 55.38 | 54.38 |
| PGSC0003DMT400019458 | Potato | cytosol | 38.85 | 43.79 |
| VIT_01s0011g02320.t01 | Wine grape | cytosol | 44.62 | 43.48 |
| PGSC0003DMT400019462 | Potato | cytosol | 44.88 | 43.29 |
| KRH71102 | Soybean | cytosol | 42.78 | 42.67 |
| Solyc05g010460.2.1 | Tomato | cytosol, nucleus, peroxisome | 44.36 | 42.57 |
| Solyc05g010470.2.1 | Tomato | cytosol | 34.91 | 42.09 |
| KRH63067 | Soybean | cytosol, golgi, mitochondrion, nucleus | 36.22 | 40.95 |
| VIT_01s0011g02330.t01 | Wine grape | cytosol, mitochondrion | 42.26 | 40.76 |
| KRH71091 | Soybean | cytosol | 41.99 | 40.4 |
| PGSC0003DMT400059315 | Potato | cytosol | 28.35 | 38.71 |
| GSMUA_Achr5P27360_001 | Banana | mitochondrion | 38.06 | 37.76 |
| GSMUA_Achr5P27350_001 | Banana | mitochondrion | 37.53 | 36.86 |
| Os08t0413200-00 | Rice | cytosol | 39.9 | 36.1 |
| AT1G61600.1 | Thale cress | cytosol | 38.58 | 34.92 |
| GSMUA_Achr3P06220_001 | Banana | cytosol | 34.65 | 34.46 |
| Os08t0413100-00 | Rice | cytosol, plasma membrane | 37.53 | 34.46 |
| GSMUA_Achr9P18410_001 | Banana | cytosol | 34.12 | 34.03 |
| Os08t0413500-00 | Rice | cytosol, plasma membrane | 35.96 | 33.66 |
| Os08t0412700-01 | Rice | cytosol, plasma membrane | 33.33 | 33.6 |
| Zm00001d050302_P001 | Maize | cytosol, plastid | 32.28 | 32.8 |
| OQU80420 | Sorghum | cytosol | 31.23 | 32.08 |
| Os08t0412800-01 | Rice | plasma membrane | 32.28 | 31.95 |
| TraesCS7D01G441700.1 | Wheat | cytosol | 37.8 | 31.58 |
| EES09009 | Sorghum | cytosol | 35.7 | 30.7 |
| TraesCS4B01G190200.1 | Wheat | cytosol | 31.76 | 30.56 |
| TraesCS4A01G113900.1 | Wheat | cytosol | 31.23 | 30.36 |
| TraesCS4D01G191600.1 | Wheat | cytosol | 30.97 | 30.03 |
Protein Annotations
| MapMan:35.2 | EntrezGene:837914 | UniProt:A0A178W3B7 | ProteinID:AEE29031.1 | ArrayExpress:AT1G13540 | EnsemblPlantsGene:AT1G13540 |
| RefSeq:AT1G13540 | TAIR:AT1G13540 | RefSeq:AT1G13540-TAIR-G | EnsemblPlants:AT1G13540.1 | TAIR:AT1G13540.1 | Unigene:At.43935 |
| EMBL:BT011225 | EMBL:BT012153 | InterPro:DUF1262 | GO:GO:0003674 | GO:GO:0008150 | RefSeq:NP_172811.1 |
| ProteinID:OAP13019.1 | PFAM:PF06880 | PANTHER:PTHR31050 | PANTHER:PTHR31050:SF2 | UniProt:Q6NM24 | UniParc:UPI0000162D65 |
| SEG:seg | : | : | : | : | : |
Description
At1g13540 [Source:UniProtKB/TrEMBL;Acc:Q6NM24]
Coordinates
chr1:-:4635463..4636805
Molecular Weight (calculated)
43908.1 Da
IEP (calculated)
5.751
GRAVY (calculated)
-0.508
Length
381 amino acids
Sequence
(BLAST)
(BLAST)
001: MYITRSFSEY RRNPAELTQP PPEGPNSGIL VIQDQHSRTR ATSCFGSWLV VDSSLSGLPL PQNLKLAVTF NIGGDDSTRD PVVFIPVLDK PLSSNCYYAI
101: KRHGKHSGEA SGSAKEDDIV SCCFCSSFVP EAKPKQLDPF DMYQQFKIHQ KEPSSRCYYA TSVAPDGVPP WFLRKKEWTV EYSRFQDFEL RDDAKGLITE
201: LRTELPLLGM STVVGKWYVP FIFVKEREVK DQIKNSMYYS MTLEQRWKEL FSDENDKSEN RDVVVDVEVE TEVVKLEGQM IERGLEANGF VWFGVGDKKI
301: GLGSVVVERM KWEEERFGWT GKGDNERSMT VKRLEKSTDG SLWKHYHCYV LIESFVLKRM DESLVLTYEF THVDKLKTKW D
101: KRHGKHSGEA SGSAKEDDIV SCCFCSSFVP EAKPKQLDPF DMYQQFKIHQ KEPSSRCYYA TSVAPDGVPP WFLRKKEWTV EYSRFQDFEL RDDAKGLITE
201: LRTELPLLGM STVVGKWYVP FIFVKEREVK DQIKNSMYYS MTLEQRWKEL FSDENDKSEN RDVVVDVEVE TEVVKLEGQM IERGLEANGF VWFGVGDKKI
301: GLGSVVVERM KWEEERFGWT GKGDNERSMT VKRLEKSTDG SLWKHYHCYV LIESFVLKRM DESLVLTYEF THVDKLKTKW D
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.