Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016728.1-P | Field mustard | cytosol | 81.91 | 82.12 |
| CDY21100 | Canola | cytosol | 81.4 | 81.61 |
| CDY50165 | Canola | cytosol | 78.29 | 79.11 |
| CDY21099 | Canola | cytosol | 77.52 | 78.12 |
| CDY50167 | Canola | cytosol | 76.23 | 76.23 |
| AT1G13480.1 | Thale cress | nucleus | 70.28 | 70.28 |
| AT1G13470.1 | Thale cress | cytosol | 68.73 | 70.18 |
| AT1G13530.1 | Thale cress | cytosol | 63.57 | 63.9 |
| AT1G13510.1 | Thale cress | cytosol | 62.02 | 63.16 |
| AT1G13540.1 | Thale cress | cytosol | 62.02 | 62.99 |
| AT1G13500.1 | Thale cress | cytosol | 62.02 | 62.18 |
| AT1G13490.2 | Thale cress | cytosol | 59.95 | 60.73 |
| AT1G13550.1 | Thale cress | cytosol | 58.14 | 57.99 |
| VIT_01s0011g02320.t01 | Wine grape | cytosol | 44.44 | 43.99 |
| PGSC0003DMT400019462 | Potato | cytosol | 44.44 | 43.54 |
| KRH71102 | Soybean | cytosol | 42.89 | 43.46 |
| PGSC0003DMT400019458 | Potato | cytosol | 37.47 | 42.9 |
| KRH71091 | Soybean | cytosol | 43.67 | 42.68 |
| Solyc05g010460.2.1 | Tomato | cytosol, nucleus, peroxisome | 43.15 | 42.07 |
| KRH63067 | Soybean | cytosol, golgi, mitochondrion, nucleus | 36.43 | 41.84 |
| VIT_01s0011g02330.t01 | Wine grape | cytosol, mitochondrion | 42.12 | 41.27 |
| Solyc05g010470.2.1 | Tomato | cytosol | 33.33 | 40.82 |
| GSMUA_Achr5P27360_001 | Banana | mitochondrion | 38.5 | 38.8 |
| PGSC0003DMT400059315 | Potato | cytosol | 27.65 | 38.35 |
| GSMUA_Achr5P27350_001 | Banana | mitochondrion | 37.98 | 37.89 |
| GSMUA_Achr3P06220_001 | Banana | cytosol | 36.95 | 37.34 |
| Os08t0413200-00 | Rice | cytosol | 38.5 | 35.39 |
| GSMUA_Achr9P18410_001 | Banana | cytosol | 34.63 | 35.08 |
| Zm00001d050302_P001 | Maize | cytosol, plastid | 33.85 | 34.93 |
| Os08t0413500-00 | Rice | cytosol, plasma membrane | 36.69 | 34.89 |
| AT1G61600.1 | Thale cress | cytosol | 37.47 | 34.44 |
| OQU80420 | Sorghum | cytosol | 32.82 | 34.23 |
| Os08t0413100-00 | Rice | cytosol, plasma membrane | 36.69 | 34.22 |
| Os08t0412700-01 | Rice | cytosol, plasma membrane | 32.56 | 33.33 |
| TraesCS7D01G441700.1 | Wheat | cytosol | 39.02 | 33.11 |
| TraesCS4D01G191600.1 | Wheat | cytosol | 33.33 | 32.82 |
| TraesCS4A01G113900.1 | Wheat | cytosol | 33.07 | 32.65 |
| TraesCS4B01G190200.1 | Wheat | cytosol | 33.33 | 32.58 |
| EES09009 | Sorghum | cytosol | 36.69 | 32.05 |
| Os08t0412800-01 | Rice | plasma membrane | 31.78 | 31.95 |
Protein Annotations
| ArrayExpress:AT1G13520 | EMBL:AK229356 | EMBL:BT010863 | EMBL:BT011317 | EnsemblPlants:AT1G13520.1 | EnsemblPlantsGene:AT1G13520 |
| EntrezGene:837912 | GO:GO:0005575 | InterPro:DUF1262 | PANTHER:PTHR31050 | PANTHER:PTHR31050:SF2 | PFAM:PF06880 |
| ProteinID:AEE29029.1 | RefSeq:AT1G13520 | RefSeq:AT1G13520-TAIR-G | RefSeq:NP_172809.1 | SEG:seg | TAIR:AT1G13520 |
| TAIR:AT1G13520.1 | UniParc:UPI0000162D63 | UniProt:Q6NNH1 | MapMan:35.2 | : | : |
Description
At1g13520 [Source:UniProtKB/TrEMBL;Acc:Q6NNH1]
Coordinates
chr1:-:4631633..4633299
Molecular Weight (calculated)
44529.2 Da
IEP (calculated)
6.988
GRAVY (calculated)
-0.698
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MYVTRHLSEY QRNSSDLTRS LPEGPNSGVL VIQDEESKPT CCFGNCYDGE LKGLPFPQNA KLTVTYRTGT GNDRRSYHDQ VLFIPVLDQP YYSNRYYVIK
101: RRGKQSGGAS ASAKEEDRVP CCFCFSYVPE VKPQEADPYD IYQQFEVHQR KPSSGYYTAT SVAPNGIPPE FLKRKYWTVE YSNSQDFGLT DDAKGINTTL
201: RSKLPNDMNT SVVVGKWYVP FIFVKERDAK DQIKSSPYYS MTLKQRWEEV YSCVNVNYNQ KGGEVVVDVD VETQVVKLEG QETISRETSG GGFVWFSVLG
301: DERQDKKIGL GSVVVERMKW EEERFGWLNN GERSNIKRSE RFEGGSSHWK SYRCLVLIES FELKRMDGSL VLTYEFTHVD KLKSKWD
101: RRGKQSGGAS ASAKEEDRVP CCFCFSYVPE VKPQEADPYD IYQQFEVHQR KPSSGYYTAT SVAPNGIPPE FLKRKYWTVE YSNSQDFGLT DDAKGINTTL
201: RSKLPNDMNT SVVVGKWYVP FIFVKERDAK DQIKSSPYYS MTLKQRWEEV YSCVNVNYNQ KGGEVVVDVD VETQVVKLEG QETISRETSG GGFVWFSVLG
301: DERQDKKIGL GSVVVERMKW EEERFGWLNN GERSNIKRSE RFEGGSSHWK SYRCLVLIES FELKRMDGSL VLTYEFTHVD KLKSKWD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.