CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89430
EER89431
EES04804
KXG19616
OQU75612
OQU75930
OQU76071
OQU85385

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13520.1	EES04804	AT2G42790.1	21798944
AT1G13520.1	EER89430	AT4G25200.1	21798944
AT1G13520.1	EER89431	AT4G25200.1	21798944
AT1G13520.1	KXG19616	AT4G25200.1	21798944
AT1G13520.1	OQU75612	AT4G25200.1	21798944
AT1G13520.1	OQU75930	AT4G25200.1	21798944
AT1G13520.1	OQU76071	AT4G25200.1	21798944
AT1G13520.1	OQU85385	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0413200-00	Rice	cytosol	52.6	55.34
Os08t0413100-00	Rice	cytosol, plasma membrane	51.24	54.7
Os08t0413500-00	Rice	cytosol, plasma membrane	49.89	54.3
TraesCS7D01G441700.1	Wheat	cytosol	51.92	50.44
GSMUA_Achr5P27350_001	Banana	mitochondrion	37.02	42.27
GSMUA_Achr5P27360_001	Banana	mitochondrion	36.57	42.19
GSMUA_Achr3P06220_001	Banana	cytosol	35.89	41.51
KRH71102	Soybean	cytosol	34.54	40.05
VIT_01s0011g02330.t01	Wine grape	cytosol, mitochondrion	34.54	38.73
CDX98103	Canola	cytosol	32.28	38.65
Bra019719.1-P	Field mustard	cytosol	33.18	38.58
CDY30029	Canola	cytosol	33.18	38.58
GSMUA_Achr9P18410_001	Banana	cytosol	33.18	38.48
CDY50165	Canola	cytosol	33.18	38.38
OQU80420	Sorghum	cytosol	32.05	38.27
VIT_01s0011g02320.t01	Wine grape	cytosol	33.63	38.11
AT1G13490.2	Thale cress	cytosol	32.51	37.7
Bra026901.1-P	Field mustard	cytosol	31.83	37.11
CDY26654	Canola	cytosol	31.83	37.11
Bra016728.1-P	Field mustard	cytosol	32.28	37.05
CDY21099	Canola	cytosol	32.05	36.98
AT1G13500.1	Thale cress	cytosol	32.05	36.79
CDY21100	Canola	cytosol	32.05	36.79
AT1G13480.1	Thale cress	nucleus	32.05	36.69
CDY50167	Canola	cytosol	32.05	36.69
AT1G13520.1	Thale cress	cytosol	32.05	36.69
AT1G13530.1	Thale cress	cytosol	31.83	36.62
Bra026902.1-P	Field mustard	cytosol	31.38	36.58
CDY16094	Canola	cytosol	31.38	36.58
CDY16092	Canola	cytosol	23.25	36.27
CDY26653	Canola	cytosol	29.12	36.24
Solyc05g010470.2.1	Tomato	cytosol	25.73	36.08
PGSC0003DMT400019462	Potato	cytosol	32.05	35.95
AT1G13540.1	Thale cress	cytosol	30.7	35.7
KRH71091	Soybean	cytosol	31.6	35.35
Solyc05g010460.2.1	Tomato	cytosol, nucleus, peroxisome	31.6	35.26
AT1G13470.1	Thale cress	cytosol	30.02	35.09
CDY50164	Canola	cytosol	30.7	35.05
AT1G13510.1	Thale cress	cytosol	30.02	35.0
AT1G13550.1	Thale cress	cytosol	30.47	34.79
Bra016727.1-P	Field mustard	cytosol	30.47	34.79
CDY21101	Canola	cytosol, mitochondrion	30.47	34.79
KRH63067	Soybean	cytosol, golgi, mitochondrion, nucleus	26.41	34.72
PGSC0003DMT400026205	Potato	mitochondrion	31.15	34.67
PGSC0003DMT400019458	Potato	cytosol	26.19	34.32
Solyc02g089650.2.1	Tomato	mitochondrion	30.7	34.17
CDY15029	Canola	cytosol, mitochondrion	32.51	33.96
KRG93807	Soybean	mitochondrion, nucleus	30.7	33.5
AT1G61600.1	Thale cress	cytosol	31.83	33.49
PGSC0003DMT400059315	Potato	cytosol	20.99	33.33
CDY16095	Canola	cytosol	28.44	32.06
Bra026900.1-P	Field mustard	cytosol	27.99	31.63
CDY26655	Canola	cytosol	27.99	31.63
CDY26357	Canola	mitochondrion	32.28	30.36
Bra038594.1-P	Field mustard	nucleus	32.05	30.15
CDY48822	Canola	cytosol	13.54	28.57
CDY47587	Canola	nucleus	11.29	27.32
CDY16093	Canola	cytosol	20.32	26.16

Protein Annotations

EnsemblPlants:EES09009	EnsemblPlantsGene:SORBI_3005G220900	EntrezGene:8076331	InterPro:DUF1262	PANTHER:PTHR31050	PANTHER:PTHR31050:SF3
PFAM:PF06880	ProteinID:EES09009	ProteinID:EES09009.1	RefSeq:XP_002450021.1	SEG:seg	unigene:Sbi.9738
UniParc:UPI0001A864E0	UniProt:C5Y8E4	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:70787581..70789423

Molecular Weight (calculated)

49058.3 Da

IEP (calculated)

7.358

GRAVY (calculated)

-0.436

Length

443 amino acids

Sequence
(BLAST)

001: MYVTRPLSRY LSDPKAMAEP PPEAPGSGFL VVLDEATEQE STLCCGLCKD PRVRSLPFPQ NRQLSVEKGN ASDPLEGIGK CVEVVSELLS MASGQDSGGG
101: APGSGRYVAP NSYAMFVPVI GQPLSSGRYY VVKVDGKHTG KVSACSKEED RTECCFCSFP ADVKPRPFDR SDVYQQMQVQ QHREGFRTAA VAVDGIPPDY
201: LLNKGWTVVA MAKPKYHELA DDARGVDSGL RDRMPDLDSL GGDPPPPSAV VVVGRWYVPF LFVKVDGDRR LKDQVRKSMF YKMTMEQSWE QIYSRENTAD
301: LHGARAAEIA VTATVRRFTA LLGGGTTVVQ AGEPQANDDG AMWFRPAAAR TTGGGVALDM VLWERMRWEV ERGGRRWVAA TGNGGNEERI QRTERRDDDS
401: SIGHWTKFGC YLLVERFVLR RMDGTVALTC EFRHTDKIRA RWV

Best Arabidopsis Sequence Match ( AT1G13480.1 )
(BLAST)

001: MYVTRRLSEY QKKPSELKLL PPEGPNSGIM VIQDEESQAT CCFGSCYEGR LKGLPFPQNV KLNAAYTSGG GEHQTTHLTP VVFIPVLDQP LSSNLYYVLQ
101: RRGKHTGKAS ASATEEERVS SCFCFSYIPD AKPQEADPYD IYQQFEIHQR RSSSRYYSAT SVASDGVPPN YLKRKDWWVS YSTSHDFGLR DDAKGINTKL
201: RLDSELTSLG KSIEIGKWYV PFIFVMEGDV KDQMNKSTFY SVTLQQRWEE VFFCENIGNE HFEVVVDVDV ETESVKLEGQ ETNLREDSGD GVVWFSVLRD
301: EKDDKKIGLG SVVVERMKWE EERFGWLNEA GERSNIKRSE RFEGGSSHWK SYRCYVLIES FELTRMDGSL VLTYEFRHVD KLKSKWD

Arabidopsis Description

At1g13480 [Source:UniProtKB/TrEMBL;Acc:Q56Y29]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.