Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU75612 | Sorghum | plastid | 100.0 | 100.0 |
| OQU76071 | Sorghum | plastid | 55.16 | 60.89 |
| TraesCS7D01G178900.1 | Wheat | cytosol | 29.15 | 53.28 |
| TraesCS7B01G083300.1 | Wheat | cytosol | 31.39 | 52.63 |
| EER89431 | Sorghum | plastid | 46.19 | 47.47 |
| TraesCS7B01G082900.1 | Wheat | plastid | 39.01 | 43.5 |
| TraesCS7B01G083500.1 | Wheat | mitochondrion | 44.39 | 42.49 |
| KXG19616 | Sorghum | plastid | 50.67 | 42.01 |
| TraesCS7A01G236700.1 | Wheat | plastid | 39.91 | 41.98 |
| TraesCS7D01G179600.1 | Wheat | mitochondrion | 43.95 | 41.88 |
| TraesCS7D01G179300.1 | Wheat | plastid | 39.46 | 41.51 |
| TraesCS7B01G083400.1 | Wheat | plastid | 39.46 | 41.31 |
| TraesCS7A01G232500.1 | Wheat | plastid | 38.12 | 41.26 |
| TraesCS7D01G179400.1 | Wheat | plastid | 38.56 | 40.95 |
| TraesCS7B01G083100.1 | Wheat | plastid | 39.01 | 40.85 |
| TraesCS7D01G179100.1 | Wheat | plastid | 39.01 | 40.47 |
| TraesCS7D01G179500.1 | Wheat | plastid | 39.01 | 40.47 |
| TraesCS7D01G179000.1 | Wheat | plastid | 38.56 | 40.38 |
| TraesCS7A01G177500.1 | Wheat | cytosol, plastid | 39.01 | 40.28 |
| TraesCS7A01G177700.1 | Wheat | cytosol, plastid | 39.01 | 40.28 |
| TraesCS7B01G083200.2 | Wheat | plastid | 39.91 | 40.27 |
| OQU85385 | Sorghum | mitochondrion | 39.91 | 40.27 |
| TraesCS7D01G179200.1 | Wheat | cytosol, plastid | 37.67 | 40.19 |
| HORVU7Hr1G036500.7 | Barley | plastid | 36.32 | 39.71 |
| TraesCS7A01G177600.1 | Wheat | plastid | 38.12 | 39.53 |
| TraesCS7D01G232600.1 | Wheat | plastid | 36.77 | 39.23 |
| EER89430 | Sorghum | plastid | 39.46 | 38.77 |
| KRH23958 | Soybean | mitochondrion | 35.87 | 37.74 |
| KRH39841 | Soybean | mitochondrion | 24.66 | 37.41 |
| HORVU7Hr1G036570.2 | Barley | cytosol | 36.77 | 37.1 |
| GSMUA_Achr10P... | Banana | mitochondrion | 35.87 | 37.04 |
| TraesCS7B01G130900.1 | Wheat | plastid | 26.46 | 36.42 |
| TraesCS2B01G531300.1 | Wheat | plastid | 28.25 | 35.8 |
| Solyc08g078700.2.1 | Tomato | plastid | 33.63 | 35.71 |
| PGSC0003DMT400012249 | Potato | mitochondrion | 33.63 | 35.55 |
| VIT_02s0154g00480.t01 | Wine grape | mitochondrion, plastid | 31.84 | 35.32 |
| HORVU7Hr1G036470.3 | Barley | cytosol, nucleus | 38.12 | 35.12 |
| CDY03368 | Canola | mitochondrion | 32.74 | 34.27 |
| CDX89437 | Canola | mitochondrion | 32.74 | 34.27 |
| Bra013872.1-P | Field mustard | mitochondrion | 32.74 | 34.27 |
| VIT_02s0154g00490.t01 | Wine grape | mitochondrion | 30.49 | 33.83 |
| AT4G25200.1 | Thale cress | mitochondrion | 31.84 | 33.81 |
| HORVU7Hr1G036540.3 | Barley | mitochondrion, nucleus, plastid | 39.01 | 33.72 |
| CDY38862 | Canola | mitochondrion | 29.15 | 33.16 |
| Bra029174.1-P | Field mustard | mitochondrion | 29.15 | 32.99 |
| AT5G51440.1 | Thale cress | mitochondrion | 30.49 | 32.38 |
| VIT_16s0022g00510.t01 | Wine grape | mitochondrion | 30.04 | 32.21 |
| CDY00476 | Canola | mitochondrion | 22.87 | 31.68 |
| TraesCS7A01G177800.1 | Wheat | nucleus | 32.29 | 31.3 |
| CDX99920 | Canola | mitochondrion | 22.42 | 31.25 |
| CDY32630 | Canola | mitochondrion | 23.77 | 31.18 |
| Bra028253.1-P | Field mustard | mitochondrion | 22.42 | 31.06 |
| Os06t0219500-00 | Rice | mitochondrion | 34.53 | 24.92 |
| TraesCS5B01G123900.1 | Wheat | plastid | 24.66 | 23.01 |
| Solyc08g078710.1.1 | Tomato | mitochondrion | 18.83 | 21.43 |
| PGSC0003DMT400012247 | Potato | mitochondrion | 17.49 | 20.0 |
| Solyc08g078720.2.1 | Tomato | mitochondrion | 13.9 | 18.45 |
| PGSC0003DMT400012246 | Potato | plastid | 13.9 | 18.24 |
Protein Annotations
| Gene3D:2.60.40.790 | MapMan:35.1 | EntrezGene:8155374 | InterPro:A-crystallin/Hsp20_dom | UniProt:C6JSJ5 | ProteinID:EES20087.1 |
| InterPro:HSP20 | InterPro:HSP20-like_chaperone | InterPro:IPR002068 | InterPro:IPR008978 | ProteinID:KXG18690.1 | ProteinID:OQU75612.1 |
| EnsemblPlants:OQU75930 | ProteinID:OQU75930 | ProteinID:OQU75930.1 | PFAM:PF00011 | PFscan:PS01031 | PANTHER:PTHR11527 |
| PANTHER:PTHR11527:SF176 | EnsemblPlantsGene:SORBI_3010G057633 | SUPFAM:SSF49764 | UniParc:UPI0001AFF712 | RefSeq:XP_002488968.1 | SEG:seg |
Description
hypothetical protein
Coordinates
chr10:-:4520910..4522109
Molecular Weight (calculated)
23750.7 Da
IEP (calculated)
7.678
GRAVY (calculated)
-0.319
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MASAVASMVA APKPVFLMDL LASPSASSRH LFRTGDARPR SSSDGVKDST GKDDAAAADG RPERDPSIPK LFTGDVLDLF PEAAKRDLLL ALAEDGGGAG
101: SMITGLAPRG WWISKKDGDA LQLKVAMPGL GKEHVKMRAE KNVLVIKGEG DKDAEGDKDA EGDDDKVPVP VPVPARYIYR IGLPSQAFKM DQIKAEMKNG
201: VLILTMPKIK GEGRKDVFGI KIE
101: SMITGLAPRG WWISKKDGDA LQLKVAMPGL GKEHVKMRAE KNVLVIKGEG DKDAEGDKDA EGDDDKVPVP VPVPARYIYR IGLPSQAFKM DQIKAEMKNG
201: VLILTMPKIK GEGRKDVFGI KIE
001: MASSSALALR RLLSSSTVAV PRALRAVRPV AASSRLFNTN AARNYEDGVD RNHHSNRHVS RHGGDFFSHI LDPFTPTRSL SQMLNFMDQV SEIPLVSATR
101: GMGASGVRRG WNVKEKDDAL HLRIDMPGLS REDVKLALEQ NTLVIRGEGE TEEGEDVSGD GRRFTSRIEL PEKVYKTDEI KAEMKNGVLK VVIPKIKEDE
201: RNNIRHINVD
101: GMGASGVRRG WNVKEKDDAL HLRIDMPGLS REDVKLALEQ NTLVIRGEGE TEEGEDVSGD GRRFTSRIEL PEKVYKTDEI KAEMKNGVLK VVIPKIKEDE
201: RNNIRHINVD
Arabidopsis Description
HSP23.523.5 kDa heat shock protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FGM9]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.