CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
plastid 1
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER95120
EER95124
KXG39718

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G59720.1	EER95120	AT5G59720.1	21798944
AT5G59720.1	EER95124	AT5G59720.1	21798944
AT5G59720.1	KXG39718	AT5G59720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028561_P001	Maize	cytosol	90.51	89.94
KXG39718	Sorghum	cytosol	89.24	89.81
EER95124	Sorghum	cytosol	89.24	89.24
TraesCS4D01G212500.1	Wheat	cytosol	86.71	88.39
TraesCS4A01G092700.1	Wheat	cytosol	82.91	84.52
TraesCS4A01G092600.1	Wheat	cytosol	82.91	84.52
HORVU4Hr1G060760.1	Barley	cytosol	79.75	84.0
EES00358	Sorghum	cytosol	72.78	76.16
EES02531	Sorghum	cytosol	72.15	75.0
EES00359	Sorghum	cytosol	70.89	74.67
EES02532	Sorghum	cytosol	71.52	74.34
Bra020295.1-P	Field mustard	cytosol	68.35	71.05
CDY60563	Canola	cytosol	68.35	71.05
CDY56096	Canola	cytosol	67.72	70.39
AT5G59720.1	Thale cress	cytosol	71.52	70.19
AT3G46230.1	Thale cress	cytosol	68.99	69.87
Bra006697.1-P	Field mustard	cytosol	67.09	69.74
AT1G53540.1	Thale cress	cytosol	68.99	69.43
CDX86069	Canola	cytosol	68.35	68.79
CDY49575	Canola	plastid	69.62	68.75
CDX88719	Canola	cytosol	69.62	68.75
Bra002539.1-P	Field mustard	plastid	69.62	68.75
CDX71079	Canola	cytosol	68.99	68.12
CDX99119	Canola	cytosol	67.09	67.52
Bra018216.1-P	Field mustard	cytosol	67.09	67.52
EES02535	Sorghum	cytosol	49.37	52.0
EES02533	Sorghum	cytosol	43.67	41.82
EER89539	Sorghum	mitochondrion	32.91	35.14
EES04437	Sorghum	mitochondrion	39.87	34.43
KXG26390	Sorghum	endoplasmic reticulum, extracellular, golgi	44.94	32.87
EES08263	Sorghum	endoplasmic reticulum	41.77	31.88

Protein Annotations

MapMan:19.1.8.1	Gene3D:2.60.40.790	EntrezGene:8081525	InterPro:A-crystallin/Hsp20_dom	UniProt:C5WQ38	EnsemblPlants:EER95120
ProteinID:EER95120	ProteinID:EER95120.1	InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978
PFAM:PF00011	PFscan:PS01031	PANTHER:PTHR11527	PANTHER:PTHR11527:SF240	EnsemblPlantsGene:SORBI_3001G425500	SUPFAM:SSF49764
UniParc:UPI0001A83143	RefSeq:XP_002468122.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:70539439..70540272

Molecular Weight (calculated)

17830.9 Da

IEP (calculated)

6.561

GRAVY (calculated)

-0.716

Length

158 amino acids

Sequence
(BLAST)

001: MSLIRRSNVF DPFSLDLWDP FEGFPFGSGG SSSLFPSFPR TSSETAAFAG TRIDWKETPE AHVFKADVPG LKKEEVKVEV EDGNVLQISG ERSKEQEEKN
101: DRWHRVERSS GKFLRRFRLP ENAKTEQIKA SMENGVLTVT VPKEEAKKAD IKNVQITG

Best Arabidopsis Sequence Match ( AT1G53540.1 )
(BLAST)

001: MSLIPSIFGG RRTNVFDPFS LDVFDPFEGF LTPSGLANAP AMDVAAFTNA KVDWRETPEA HVFKADLPGL RKEEVKVEVE DGNILQISGE RSNENEEKND
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG

Arabidopsis Description

HSP17.6C17.6 kDa class I heat shock protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P13853]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.