Factsheet for Bra018216.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99119	Canola	cytosol	98.09	98.09
CDX86069	Canola	cytosol	96.18	96.18
AT3G46230.1	Thale cress	cytosol	89.81	90.38
AT1G53540.1	Thale cress	cytosol	87.9	87.9
Bra020295.1-P	Field mustard	cytosol	82.17	84.87
Bra006697.1-P	Field mustard	cytosol	80.89	83.55
Bra002539.1-P	Field mustard	plastid	83.44	81.88
TraesCS4A01G092200.1	Wheat	cytosol	71.34	74.17
TraesCS4B01G212200.1	Wheat	cytosol	72.61	72.61
TraesCS4D01G213100.1	Wheat	cytosol	71.97	71.97
TraesCS4D01G213300.1	Wheat	cytosol	71.34	71.34
TraesCS4D01G212300.1	Wheat	cytosol	71.34	71.34
TraesCS4B01G212300.1	Wheat	cytosol	70.06	70.97
TraesCS4A01G092100.1	Wheat	cytosol	71.34	70.89
EER95124	Sorghum	cytosol	70.7	70.25
HORVU4Hr1G060720.2	Barley	cytosol	70.7	70.25
Zm00001d028555_P001	Maize	extracellular, plasma membrane	70.06	69.62
Zm00001d028557_P001	Maize	mitochondrion	70.06	69.62
Os03t0266900-02	Rice	cytosol	68.15	69.48
Os03t0267200-01	Rice	cytosol, plastid	68.79	67.92
Os03t0267000-00	Rice	cytosol, plastid	69.43	67.7
TraesCS4D01G212500.1	Wheat	cytosol	66.24	67.1
EER95120	Sorghum	cytosol	67.52	67.09
TraesCS4A01G092900.1	Wheat	cytosol	67.52	67.09
Os03t0266300-01	Rice	nucleus, plasma membrane	68.79	67.08
KXG39718	Sorghum	cytosol	66.88	66.88
Bra018383.1-P	Field mustard	cytosol	66.24	66.67
TraesCS4D01G212200.1	Wheat	cytosol	68.15	66.46
TraesCS4A01G092800.1	Wheat	cytosol	66.88	66.46
TraesCS4D01G212400.1	Wheat	cytosol	66.88	66.46
Zm00001d028561_P001	Maize	cytosol	66.88	66.04
TraesCS4A01G092700.1	Wheat	cytosol	64.97	65.81
TraesCS4A01G092600.1	Wheat	cytosol	64.97	65.81
TraesCS4B01G211600.1	Wheat	cytosol	64.97	64.97
Bra031725.1-P	Field mustard	cytosol	65.61	64.78
Bra018384.1-P	Field mustard	cytosol	65.61	64.78
HORVU4Hr1G060760.1	Barley	cytosol	60.51	63.33
Zm00001d047841_P001	Maize	cytosol	65.61	63.19
Bra028141.1-P	Field mustard	cytosol	38.22	43.17
Bra027999.1-P	Field mustard	extracellular	40.76	37.21
Bra000703.1-P	Field mustard	extracellular	40.76	32.49

Protein Annotations

EnsemblPlants:Bra018216.1	EnsemblPlants:Bra018216.1-P	EnsemblPlantsGene:Bra018216	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20
InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF241	PFAM:PF00011
PFscan:PS01031	SEG:seg	SUPFAM:SSF49764	UniParc:UPI00018381C0	UniProt:M4DNX8	MapMan:19.1.8.1

Description

AT1G53540 (E=2e-072) | 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)

Coordinates

chrA06:+:11157555..11158028

Molecular Weight (calculated)

17669.9 Da

IEP (calculated)

5.395

GRAVY (calculated)

-0.619

Length

157 amino acids

Sequence
(BLAST)

001: MSLIPSFFGG RRTNVFDPFS LDLYDPFEGF LTPSGMTNAT SKDVAAFTNA KVDWRETPEA HVFKADLPGL KKEEVKVEVE DGNILQISGE RSSENEEKSD
101: KWHRVERSSG KFMRRFKLPE NAKVDEVKAC MENGVLSVTV PKMPERKPEV KSIDISG

Best Arabidopsis Sequence Match ( AT1G53540.1 )
(BLAST)

001: MSLIPSIFGG RRTNVFDPFS LDVFDPFEGF LTPSGLANAP AMDVAAFTNA KVDWRETPEA HVFKADLPGL RKEEVKVEVE DGNILQISGE RSNENEEKND
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG

Arabidopsis Description

HSP17.6C17.6 kDa class I heat shock protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P13853]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.