Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plastid
Predictor Summary:
Predictor Summary:
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- plastid 1
- cytosol 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
27992503
|
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0266300-01 | |
| Os03t0266900-02 | |
| Os03t0267000-00 | |
| Os03t0267200-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G59720.1 | Os03t0266300-01 | AT5G59720.1 | 21798944 |
| AT5G59720.1 | Os03t0266900-02 | AT5G59720.1 | 21798944 |
| AT5G59720.1 | Os03t0267000-00 | AT5G59720.1 | 21798944 |
| AT5G59720.1 | Os03t0267200-01 | AT5G59720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0266900-02 | Rice | cytosol | 90.68 | 94.81 |
| Os03t0266300-01 | Rice | nucleus, plasma membrane | 92.55 | 92.55 |
| Zm00001d028557_P001 | Maize | mitochondrion | 88.82 | 90.51 |
| Zm00001d028555_P001 | Maize | extracellular, plasma membrane | 88.82 | 90.51 |
| EER95124 | Sorghum | cytosol | 87.58 | 89.24 |
| KXG39718 | Sorghum | cytosol | 86.96 | 89.17 |
| Os03t0267200-01 | Rice | cytosol, plastid | 87.58 | 88.68 |
| TraesCS4A01G092900.1 | Wheat | cytosol | 85.71 | 87.34 |
| TraesCS4D01G212200.1 | Wheat | cytosol | 86.34 | 86.34 |
| TraesCS4A01G092800.1 | Wheat | cytosol | 84.47 | 86.08 |
| TraesCS4D01G212400.1 | Wheat | cytosol | 83.85 | 85.44 |
| TraesCS4B01G211600.1 | Wheat | cytosol | 83.23 | 85.35 |
| Zm00001d047841_P001 | Maize | cytosol | 85.09 | 84.05 |
| Os01t0136200-01 | Rice | cytosol, plastid | 71.43 | 76.67 |
| Os01t0136100-01 | Rice | cytosol, nucleus, plastid | 70.81 | 76.0 |
| Os01t0136000-00 | Rice | cytosol | 70.19 | 75.84 |
| CDY60563 | Canola | cytosol | 68.32 | 72.37 |
| Bra020295.1-P | Field mustard | cytosol | 68.32 | 72.37 |
| CDY56096 | Canola | cytosol | 67.08 | 71.05 |
| Bra006697.1-P | Field mustard | cytosol | 67.08 | 71.05 |
| AT5G59720.1 | Thale cress | cytosol | 70.81 | 70.81 |
| AT1G53540.1 | Thale cress | cytosol | 68.32 | 70.06 |
| CDX86069 | Canola | cytosol | 68.32 | 70.06 |
| CDX88719 | Canola | cytosol | 69.57 | 70.0 |
| Bra002539.1-P | Field mustard | plastid | 69.57 | 70.0 |
| CDX71079 | Canola | cytosol | 69.57 | 70.0 |
| CDX99119 | Canola | cytosol | 67.7 | 69.43 |
| Bra018216.1-P | Field mustard | cytosol | 67.7 | 69.43 |
| AT3G46230.1 | Thale cress | cytosol | 67.08 | 69.23 |
| CDY49575 | Canola | plastid | 67.7 | 68.12 |
| Os01t0135800-01 | Rice | cytosol | 48.45 | 52.0 |
| Os06t0253100-01 | Rice | mitochondrion | 37.27 | 41.1 |
| Os01t0135900-02 | Rice | plasma membrane | 42.24 | 40.96 |
| Os02t0128000-00 | Rice | cytosol | 37.89 | 34.46 |
| Os04t0445100-01 | Rice | nucleus, plastid | 40.37 | 30.23 |
| Os11t0244200-01 | Rice | endoplasmic reticulum | 37.27 | 29.13 |
Protein Annotations
| MapMan:19.1.8.1 | Gene3D:2.60.40.790 | EntrezGene:4332361 | InterPro:A-crystallin/Hsp20_dom | ProteinID:AAC78393.1 | ProteinID:AAP06883.1 |
| ProteinID:ABF95156.1 | ProteinID:BAF11575.1 | ProteinID:BAS83421.1 | UniProt:E5D3K0 | ProteinID:EAZ26379.1 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009408 |
| GO:GO:0009628 | GO:GO:0042542 | GO:GO:0045471 | GO:GO:0046685 | GO:GO:0046686 | GO:GO:0046688 |
| EMBL:GU120341 | InterPro:HSP20 | InterPro:HSP20-like_chaperone | InterPro:IPR002068 | InterPro:IPR008978 | EnsemblPlantsGene:Os03g0267000 |
| EnsemblPlants:Os03t0267000-00 | PFAM:PF00011 | PFscan:PS01031 | PANTHER:PTHR11527 | PANTHER:PTHR11527:SF240 | UniProt:Q84Q72 |
| SUPFAM:SSF49764 | UniParc:UPI000018DC14 | EMBL:X75616 | RefSeq:XP_015631116.1 | SEG:seg | : |
Description
18.0-KD CLASS I HEAT SHOCK PROTEINLow molecular mass heat shock protein Oshsp18.0. (Os03t0267000-00)
Coordinates
chr3:+:8834869..8835576
Molecular Weight (calculated)
18083.3 Da
IEP (calculated)
7.701
GRAVY (calculated)
-0.746
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLIRRSNVF DPFSLDLWDP FDGFPFGSGS RSSGSIFPSF PRGTSSETAA FAGARIDWKE TPEAHVFKAD VPGLKKEEVK VEVEDGNVLQ ISGERSKEQE
101: EKTDKWHRVE RSSGKFLRRF RLPENTKPEQ IKASMENGVL TVTVPKEEPK KPDVKSIQVT G
101: EKTDKWHRVE RSSGKFLRRF RLPENTKPEQ IKASMENGVL TVTVPKEEPK KPDVKSIQVT G
001: MSLIPSIFGG RRTNVFDPFS LDVFDPFEGF LTPSGLANAP AMDVAAFTNA KVDWRETPEA HVFKADLPGL RKEEVKVEVE DGNILQISGE RSNENEEKND
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG
Arabidopsis Description
HSP17.6C17.6 kDa class I heat shock protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P13853]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.