Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d028555_P001 | |
| Zm00001d028557_P001 | |
| Zm00001d028561_P001 | |
| Zm00001d047841_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG39718 | Sorghum | cytosol | 92.02 | 95.54 |
| Zm00001d028557_P001 | Maize | mitochondrion | 85.89 | 88.61 |
| Zm00001d028555_P001 | Maize | extracellular, plasma membrane | 85.28 | 87.97 |
| TraesCS4A01G092200.1 | Wheat | cytosol | 79.75 | 86.09 |
| TraesCS4A01G092900.1 | Wheat | cytosol | 82.82 | 85.44 |
| Os03t0266300-01 | Rice | nucleus, plasma membrane | 84.05 | 85.09 |
| Os03t0267000-00 | Rice | cytosol, plastid | 84.05 | 85.09 |
| TraesCS4A01G092100.1 | Wheat | cytosol | 82.21 | 84.81 |
| TraesCS4D01G213100.1 | Wheat | cytosol | 81.6 | 84.71 |
| TraesCS4D01G212200.1 | Wheat | cytosol | 83.44 | 84.47 |
| Os03t0266900-02 | Rice | cytosol | 79.14 | 83.77 |
| TraesCS4A01G092800.1 | Wheat | cytosol | 80.98 | 83.54 |
| TraesCS4D01G213300.1 | Wheat | cytosol | 80.37 | 83.44 |
| TraesCS4B01G211600.1 | Wheat | cytosol | 80.37 | 83.44 |
| TraesCS4B01G212300.1 | Wheat | cytosol | 79.14 | 83.23 |
| Zm00001d028561_P001 | Maize | cytosol | 80.98 | 83.02 |
| HORVU4Hr1G060720.2 | Barley | cytosol | 80.37 | 82.91 |
| TraesCS4D01G212400.1 | Wheat | cytosol | 80.37 | 82.91 |
| TraesCS4D01G212300.1 | Wheat | cytosol | 79.75 | 82.8 |
| TraesCS4B01G212200.1 | Wheat | cytosol | 79.75 | 82.8 |
| Os03t0267200-01 | Rice | cytosol, plastid | 80.37 | 82.39 |
| Zm00001d039933_P001 | Maize | plasma membrane | 65.64 | 69.48 |
| CDY60563 | Canola | cytosol | 64.42 | 69.08 |
| Bra020295.1-P | Field mustard | cytosol | 64.42 | 69.08 |
| Bra006697.1-P | Field mustard | cytosol | 63.19 | 67.76 |
| Zm00001d039936_P001 | Maize | cytosol | 63.19 | 67.76 |
| Bra002539.1-P | Field mustard | plastid | 66.26 | 67.5 |
| AT3G46230.1 | Thale cress | cytosol | 64.42 | 67.31 |
| CDY56096 | Canola | cytosol | 62.58 | 67.11 |
| Zm00001d008577_P001 | Maize | cytosol | 63.8 | 67.1 |
| AT5G59720.1 | Thale cress | cytosol | 66.26 | 67.08 |
| AT1G53540.1 | Thale cress | cytosol | 64.42 | 66.88 |
| CDX86069 | Canola | cytosol | 64.42 | 66.88 |
| CDX71079 | Canola | cytosol | 65.64 | 66.88 |
| CDY49575 | Canola | plastid | 65.03 | 66.25 |
| CDX88719 | Canola | cytosol | 65.03 | 66.25 |
| Bra018216.1-P | Field mustard | cytosol | 63.19 | 65.61 |
| CDX99119 | Canola | cytosol | 63.19 | 65.61 |
| Zm00001d039942_P001 | Maize | cytosol | 47.85 | 52.35 |
| Zm00001d044728_P001 | Maize | mitochondrion | 35.58 | 39.73 |
| Zm00001d039941_P001 | Maize | cytosol | 37.42 | 36.75 |
| Zm00001d007271_P001 | Maize | cytosol, endoplasmic reticulum | 41.72 | 36.36 |
| Zm00001d053965_P001 | Maize | mitochondrion, plastid | 38.65 | 34.24 |
| Zm00001d003554_P001 | Maize | endoplasmic reticulum, golgi | 40.49 | 31.73 |
| Zm00001d025508_P001 | Maize | extracellular | 39.26 | 29.49 |
Protein Annotations
| EMBL:BT040297 | EnsemblPlants:Zm00001d047841_P001 | EnsemblPlants:Zm00001d047841_T001 | EnsemblPlantsGene:Zm00001d047841 | EntrezGene:100283766 | Gene3D:2.60.40.790 |
| InterPro:A-crystallin/Hsp20_dom | InterPro:HSP20 | InterPro:HSP20-like_chaperone | InterPro:IPR002068 | InterPro:IPR008978 | PANTHER:PTHR11527 |
| PANTHER:PTHR11527:SF240 | PFAM:PF00011 | PFscan:PS01031 | ProteinID:AQL07768.1 | SEG:seg | SUPFAM:SSF49764 |
| UniParc:UPI00017B8087 | UniProt:B4FT59 | MapMan:19.1.8.1 | : | : | : |
Description
17.4 kDa class I heat shock protein
Coordinates
chr9:+:143024246..143024842
Molecular Weight (calculated)
18023.0 Da
IEP (calculated)
5.372
GRAVY (calculated)
-0.562
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLIRRGSAF DPFSLDLWDP FQGLFPFGSG SSSSSSLFPS FGGTTTSSET AAFAGARVDW KETPEAHVFK TDVPGLKKEE VKVELEDGNV LQISGERCKE
101: QEEKTDTWHR VERSSGKFLR RFRLTENART EQISASMENG VLTVTVPKEE AKKADVKSIQ ISG
101: QEEKTDTWHR VERSSGKFLR RFRLTENART EQISASMENG VLTVTVPKEE AKKADVKSIQ ISG
001: MSLIPSIFGG RRTNVFDPFS LDVFDPFEGF LTPSGLANAP AMDVAAFTNA KVDWRETPEA HVFKADLPGL RKEEVKVEVE DGNILQISGE RSNENEEKND
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG
Arabidopsis Description
HSP17.6C17.6 kDa class I heat shock protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P13853]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.