Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
27992503
|
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0266300-01 | |
| Os03t0266900-02 | |
| Os03t0267000-00 | |
| Os03t0267200-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G59720.1 | Os03t0266300-01 | AT5G59720.1 | 21798944 |
| AT5G59720.1 | Os03t0266900-02 | AT5G59720.1 | 21798944 |
| AT5G59720.1 | Os03t0267000-00 | AT5G59720.1 | 21798944 |
| AT5G59720.1 | Os03t0267200-01 | AT5G59720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0266900-02 | Rice | cytosol | 89.94 | 92.86 |
| Os03t0267000-00 | Rice | cytosol, plastid | 88.68 | 87.58 |
| Os03t0266300-01 | Rice | nucleus, plasma membrane | 88.68 | 87.58 |
| KXG39718 | Sorghum | cytosol | 84.28 | 85.35 |
| Zm00001d028557_P001 | Maize | mitochondrion | 83.02 | 83.54 |
| Zm00001d028555_P001 | Maize | extracellular, plasma membrane | 82.39 | 82.91 |
| TraesCS4A01G092900.1 | Wheat | cytosol | 82.39 | 82.91 |
| EER95124 | Sorghum | cytosol | 82.39 | 82.91 |
| TraesCS4D01G212200.1 | Wheat | cytosol | 83.02 | 81.99 |
| TraesCS4A01G092800.1 | Wheat | cytosol | 81.13 | 81.65 |
| TraesCS4B01G211600.1 | Wheat | cytosol | 80.5 | 81.53 |
| TraesCS4D01G212400.1 | Wheat | cytosol | 80.5 | 81.01 |
| Zm00001d047841_P001 | Maize | cytosol | 82.39 | 80.37 |
| Os01t0136200-01 | Rice | cytosol, plastid | 70.44 | 74.67 |
| Os01t0136000-00 | Rice | cytosol | 69.81 | 74.5 |
| Os01t0136100-01 | Rice | cytosol, nucleus, plastid | 69.81 | 74.0 |
| CDY60563 | Canola | cytosol | 69.18 | 72.37 |
| Bra020295.1-P | Field mustard | cytosol | 69.18 | 72.37 |
| Bra006697.1-P | Field mustard | cytosol | 67.92 | 71.05 |
| AT1G53540.1 | Thale cress | cytosol | 69.81 | 70.7 |
| AT3G46230.1 | Thale cress | cytosol | 69.18 | 70.51 |
| CDY56096 | Canola | cytosol | 66.67 | 69.74 |
| CDX99119 | Canola | cytosol | 68.55 | 69.43 |
| CDX88719 | Canola | cytosol | 69.81 | 69.38 |
| Bra002539.1-P | Field mustard | plastid | 69.81 | 69.38 |
| CDX71079 | Canola | cytosol | 69.81 | 69.38 |
| Bra018216.1-P | Field mustard | cytosol | 67.92 | 68.79 |
| CDX86069 | Canola | cytosol | 67.92 | 68.79 |
| AT5G59720.1 | Thale cress | cytosol | 69.18 | 68.32 |
| CDY49575 | Canola | plastid | 67.92 | 67.5 |
| Os01t0135800-01 | Rice | cytosol | 48.43 | 51.33 |
| Os01t0135900-02 | Rice | plasma membrane | 42.14 | 40.36 |
| Os06t0253100-01 | Rice | mitochondrion | 36.48 | 39.73 |
| Os02t0128000-00 | Rice | cytosol | 37.11 | 33.33 |
| Os04t0445100-01 | Rice | nucleus, plastid | 40.25 | 29.77 |
| Os11t0244200-01 | Rice | endoplasmic reticulum | 38.36 | 29.61 |
Protein Annotations
| MapMan:19.1.8.1 | Gene3D:2.60.40.790 | EntrezGene:4332363 | InterPro:A-crystallin/Hsp20_dom | ProteinID:AAC78394.1 | ProteinID:AAP06884.1 |
| ProteinID:AAP06891.1 | ProteinID:ABF95157.1 | EMBL:AK069547 | ProteinID:BAF11576.1 | ProteinID:BAS83422.1 | UniProt:E5D3J9 |
| ProteinID:EAZ26380.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0009408 | GO:GO:0009628 | GO:GO:0042542 | GO:GO:0045471 | GO:GO:0046685 |
| GO:GO:0046686 | GO:GO:0046688 | EMBL:GU120340 | InterPro:HSP20 | InterPro:HSP20-like_chaperone | InterPro:IPR002068 |
| InterPro:IPR008978 | EnsemblPlantsGene:Os03g0267200 | EnsemblPlants:Os03t0267200-01 | PFAM:PF00011 | PFscan:PS01031 | PANTHER:PTHR11527 |
| PANTHER:PTHR11527:SF240 | UniProt:Q84J50 | SUPFAM:SSF49764 | UniParc:UPI000009C615 | RefSeq:XP_015632364.1 | SEG:seg |
Description
17.7 KDA CLASS I HEAT SHOCK PROTEINLow molecular mass heat shock protein Oshsp17.7. (Os03t0267200-01)
Coordinates
chr3:-:8837821..8838527
Molecular Weight (calculated)
17658.7 Da
IEP (calculated)
6.559
GRAVY (calculated)
-0.719
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLIRRGNAF DPFSLDLWDP VDGFPFGSGG SSSSSGSLFP RANSDAAAFA GARIDWKETP EVHVFKADVP GLKKEEVKVE VDDGNILQIS GERSREQEEK
101: SDKWHRVERS SGKFLRRFRL PENTKPEQIK ASMENGVLTV TVPKEEPKKP DVKSIQISG
101: SDKWHRVERS SGKFLRRFRL PENTKPEQIK ASMENGVLTV TVPKEEPKKP DVKSIQISG
001: MSLIPSIFGG RRTNVFDPFS LDVFDPFEGF LTPSGLANAP AMDVAAFTNA KVDWRETPEA HVFKADLPGL RKEEVKVEVE DGNILQISGE RSNENEEKND
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG
Arabidopsis Description
HSP17.6C17.6 kDa class I heat shock protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P13853]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.