Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G212200.1 | Wheat | cytosol | 92.99 | 90.68 |
| TraesCS4A01G092900.1 | Wheat | cytosol | 90.45 | 89.87 |
| Zm00001d028557_P001 | Maize | mitochondrion | 88.53 | 87.97 |
| Zm00001d028555_P001 | Maize | extracellular, plasma membrane | 87.9 | 87.34 |
| TraesCS4A01G092800.1 | Wheat | cytosol | 86.62 | 86.08 |
| EER95124 | Sorghum | cytosol | 86.62 | 86.08 |
| KXG39718 | Sorghum | cytosol | 85.99 | 85.99 |
| TraesCS4D01G212400.1 | Wheat | cytosol | 85.99 | 85.44 |
| TraesCS4B01G212200.1 | Wheat | cytosol | 83.44 | 83.44 |
| Os03t0267000-00 | Rice | cytosol, plastid | 85.35 | 83.23 |
| TraesCS4B01G212300.1 | Wheat | cytosol | 82.17 | 83.23 |
| Os03t0266900-02 | Rice | cytosol | 81.53 | 83.12 |
| Os03t0267200-01 | Rice | cytosol, plastid | 81.53 | 80.5 |
| Zm00001d047841_P001 | Maize | cytosol | 83.44 | 80.37 |
| TraesCS3B01G049900.1 | Wheat | cytosol | 68.15 | 70.86 |
| TraesCS3B01G049800.1 | Wheat | cytosol | 68.15 | 70.86 |
| TraesCS5B01G245700.1 | Wheat | cytosol | 67.52 | 68.83 |
| CDY60563 | Canola | cytosol | 66.24 | 68.42 |
| Bra020295.1-P | Field mustard | cytosol | 66.24 | 68.42 |
| Bra006697.1-P | Field mustard | cytosol | 64.97 | 67.11 |
| Bra002539.1-P | Field mustard | plastid | 68.15 | 66.88 |
| AT3G46230.1 | Thale cress | cytosol | 66.24 | 66.67 |
| CDY56096 | Canola | cytosol | 64.33 | 66.45 |
| AT1G53540.1 | Thale cress | cytosol | 65.61 | 65.61 |
| AT5G59720.1 | Thale cress | cytosol | 66.88 | 65.22 |
| CDX71079 | Canola | cytosol | 66.24 | 65.0 |
| CDY49575 | Canola | plastid | 66.24 | 65.0 |
| CDX88719 | Canola | cytosol | 66.24 | 65.0 |
| CDX86069 | Canola | cytosol | 64.97 | 64.97 |
| Bra018216.1-P | Field mustard | cytosol | 64.97 | 64.97 |
| CDX99119 | Canola | cytosol | 64.97 | 64.97 |
| TraesCS4B01G211700.1 | Wheat | cytosol | 48.41 | 61.29 |
| TraesCS3B01G048600.1 | Wheat | cytosol | 45.22 | 46.1 |
| TraesCS7B01G088700.1 | Wheat | cytosol | 45.86 | 45.57 |
| TraesCS7B01G088600.1 | Wheat | cytosol | 45.22 | 44.94 |
| TraesCS7B01G109100.1 | Wheat | mitochondrion, peroxisome | 35.67 | 40.58 |
| TraesCS3B01G048700.1 | Wheat | cytosol | 42.04 | 40.24 |
| TraesCS3B01G048800.1 | Wheat | cytosol | 40.13 | 38.18 |
| TraesCS6B01G110200.1 | Wheat | mitochondrion | 40.76 | 34.41 |
| TraesCS4B01G089800.1 | Wheat | endoplasmic reticulum | 39.49 | 30.54 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G211600.1 | EnsemblPlantsGene:TraesCS4B01G211600 | Gene3D:2.60.40.790 | InterPro:A-crystallin/Hsp20_dom | InterPro:HSP20 | InterPro:HSP20-like_chaperone |
| InterPro:IPR002068 | InterPro:IPR008978 | PANTHER:PTHR11527 | PANTHER:PTHR11527:SF240 | PFAM:PF00011 | PFscan:PS01031 |
| SEG:seg | SUPFAM:SSF49764 | TIGR:cd06472 | MapMan:19.1.8.1 | : | : |
Description
No Description!
Coordinates
chr4B:+:449928126..449929253
Molecular Weight (calculated)
17296.4 Da
IEP (calculated)
5.865
GRAVY (calculated)
-0.547
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLIPRGNAF DPFSLDLWNP FDGFPFGSGS SGGGGSLFPS FPRISSETAA FAGARIDWKE TPEAHVFKAD VPGLKKEEVE DGNVLQISGE RNKEKEEKTD
101: TWHRVERSSG KFLRRFRLPE DAKVEQIKAA MENGVLTVTV AKEEAKKPEV KSILISG
101: TWHRVERSSG KFLRRFRLPE DAKVEQIKAA MENGVLTVTV AKEEAKKPEV KSILISG
001: MSLIPSFFGN NRRSNSIFDP FSLDVWDPFK ELQFPSSLSG ETSAITNARV DWKETAEAHV FKADLPGMKK EEVKVEIEDD SVLKISGERH VEKEEKQDTW
101: HRVERSSGQF SRKFKLPENV KMDQVKASME NGVLTVTVPK VEEAKKKAQV KSIDISG
101: HRVERSSGQF SRKFKLPENV KMDQVKASME NGVLTVTVPK VEEAKKKAQV KSIDISG
Arabidopsis Description
HSP17.817.8 kDa class I heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LNW0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.