Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G092200.1 | Wheat | cytosol | 94.3 | 98.68 |
| HORVU4Hr1G060720.2 | Barley | cytosol | 98.1 | 98.1 |
| TraesCS4D01G213100.1 | Wheat | cytosol | 97.47 | 98.09 |
| TraesCS4D01G213300.1 | Wheat | cytosol | 96.2 | 96.82 |
| TraesCS4B01G212300.1 | Wheat | cytosol | 92.41 | 94.19 |
| Zm00001d028555_P001 | Maize | extracellular, plasma membrane | 89.24 | 89.24 |
| Os03t0266300-01 | Rice | nucleus, plasma membrane | 90.51 | 88.82 |
| Zm00001d028557_P001 | Maize | mitochondrion | 88.61 | 88.61 |
| EER95124 | Sorghum | cytosol | 88.61 | 88.61 |
| KXG39718 | Sorghum | cytosol | 86.71 | 87.26 |
| TraesCS4A01G092900.1 | Wheat | cytosol | 86.08 | 86.08 |
| TraesCS4A01G092700.1 | Wheat | cytosol | 83.54 | 85.16 |
| TraesCS4A01G092600.1 | Wheat | cytosol | 82.91 | 84.52 |
| TraesCS4A01G092800.1 | Wheat | cytosol | 84.18 | 84.18 |
| Zm00001d047841_P001 | Maize | cytosol | 84.81 | 82.21 |
| CDY60563 | Canola | cytosol | 71.52 | 74.34 |
| Bra020295.1-P | Field mustard | cytosol | 71.52 | 74.34 |
| TraesCS3A01G034500.1 | Wheat | cytosol | 70.89 | 74.17 |
| CDY56096 | Canola | cytosol | 70.89 | 73.68 |
| AT3G46230.1 | Thale cress | cytosol | 72.15 | 73.08 |
| Bra006697.1-P | Field mustard | cytosol | 70.25 | 73.03 |
| TraesCS3A01G034000.1 | Wheat | cytosol | 69.62 | 72.85 |
| AT1G53540.1 | Thale cress | cytosol | 72.15 | 72.61 |
| CDX71079 | Canola | cytosol | 73.42 | 72.5 |
| CDX88719 | Canola | cytosol | 73.42 | 72.5 |
| TraesCS3A01G033900.1 | Wheat | cytosol | 68.99 | 72.19 |
| CDX86069 | Canola | cytosol | 71.52 | 71.97 |
| AT5G59720.1 | Thale cress | cytosol | 72.78 | 71.43 |
| CDX99119 | Canola | cytosol | 70.89 | 71.34 |
| Bra018216.1-P | Field mustard | cytosol | 70.89 | 71.34 |
| Bra002539.1-P | Field mustard | plastid | 72.15 | 71.25 |
| CDY49575 | Canola | plastid | 70.25 | 69.38 |
| TraesCS7A01G183800.1 | Wheat | cytosol | 48.1 | 49.03 |
| TraesCS7A01G202200.1 | Wheat | mitochondrion, peroxisome | 36.71 | 42.03 |
| TraesCS3A01G035400.1 | Wheat | cytosol | 41.77 | 40.0 |
| TraesCS6A01G087600.1 | Wheat | cytosol | 44.3 | 37.84 |
| TraesCS3A01G035500.1 | Wheat | mitochondrion, plastid | 43.67 | 33.17 |
| TraesCS2A01G312900.1 | Wheat | endoplasmic reticulum, golgi | 42.41 | 30.59 |
| TraesCS4A01G226700.1 | Wheat | plastid | 40.51 | 25.81 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G092100.1 | EnsemblPlantsGene:TraesCS4A01G092100 | Gene3D:2.60.40.790 | InterPro:A-crystallin/Hsp20_dom | InterPro:HSP20 | InterPro:HSP20-like_chaperone |
| InterPro:IPR002068 | InterPro:IPR008978 | PANTHER:PTHR11527 | PANTHER:PTHR11527:SF240 | PFAM:PF00011 | PFscan:PS01031 |
| SEG:seg | SUPFAM:SSF49764 | TIGR:cd06472 | MapMan:19.1.8.1 | : | : |
Description
No Description!
Coordinates
chr4A:+:98785516..98785992
Molecular Weight (calculated)
17560.5 Da
IEP (calculated)
5.868
GRAVY (calculated)
-0.672
Length
158 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLIRRSNVF DPFSLDFFDP FDGFPFGSGS SNSGGSLVPR TSSDTAAFAG ARIDWKETPE AHVFKADVPG LKKEEVKVEV EDGNILQISG ERNKEQEEKT
101: DTWHRVERSS GKFLRRFRLP ENAKAEQVKA SMENGVLTVT VPKEEAKKPD VKSIQISG
101: DTWHRVERSS GKFLRRFRLP ENAKAEQVKA SMENGVLTVT VPKEEAKKPD VKSIQISG
001: MSLIPSFFGN NRRSNSIFDP FSLDVWDPFK ELQFPSSLSG ETSAITNARV DWKETAEAHV FKADLPGMKK EEVKVEIEDD SVLKISGERH VEKEEKQDTW
101: HRVERSSGQF SRKFKLPENV KMDQVKASME NGVLTVTVPK VEEAKKKAQV KSIDISG
101: HRVERSSGQF SRKFKLPENV KMDQVKASME NGVLTVTVPK VEEAKKKAQV KSIDISG
Arabidopsis Description
HSP17.817.8 kDa class I heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LNW0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.