Factsheet for Bra020295.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002539.1-P
Bra006697.1-P
Bra020295.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G59720.1	Bra002539.1-P	AT5G59720.1	21798944
AT5G59720.1	Bra006697.1-P	AT5G59720.1	21798944
AT5G59720.1	Bra020295.1-P	AT5G59720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60563	Canola	cytosol	100.0	100.0
Bra006697.1-P	Field mustard	cytosol	98.68	98.68
Bra002539.1-P	Field mustard	plastid	92.76	88.12
AT5G59720.1	Thale cress	cytosol	90.79	85.71
Bra018216.1-P	Field mustard	cytosol	84.87	82.17
TraesCS4A01G092200.1	Wheat	cytosol	75.0	75.5
TraesCS4B01G212200.1	Wheat	cytosol	75.66	73.25
TraesCS4D01G213100.1	Wheat	cytosol	75.0	72.61
TraesCS4B01G212300.1	Wheat	cytosol	73.68	72.26
TraesCS4D01G212300.1	Wheat	cytosol	74.34	71.97
TraesCS4A01G092100.1	Wheat	cytosol	74.34	71.52
Os03t0266900-02	Rice	cytosol	72.37	71.43
TraesCS4D01G213300.1	Wheat	cytosol	73.68	71.34
HORVU4Hr1G060720.2	Barley	cytosol	73.68	70.89
EER95124	Sorghum	cytosol	73.68	70.89
Zm00001d028555_P001	Maize	extracellular, plasma membrane	73.03	70.25
Zm00001d028557_P001	Maize	mitochondrion	73.03	70.25
Os03t0267200-01	Rice	cytosol, plastid	72.37	69.18
KXG39718	Sorghum	cytosol	71.05	68.79
EER95120	Sorghum	cytosol	71.05	68.35
TraesCS4A01G092900.1	Wheat	cytosol	71.05	68.35
Os03t0266300-01	Rice	nucleus, plasma membrane	72.37	68.32
Os03t0267000-00	Rice	cytosol, plastid	72.37	68.32
Bra018383.1-P	Field mustard	cytosol	69.74	67.95
TraesCS4D01G212500.1	Wheat	cytosol	69.08	67.74
TraesCS4D01G212200.1	Wheat	cytosol	71.71	67.7
Zm00001d028561_P001	Maize	cytosol	69.74	66.67
TraesCS4A01G092800.1	Wheat	cytosol	69.08	66.46
TraesCS4D01G212400.1	Wheat	cytosol	69.08	66.46
TraesCS4A01G092700.1	Wheat	cytosol	67.76	66.45
TraesCS4A01G092600.1	Wheat	cytosol	67.76	66.45
TraesCS4B01G211600.1	Wheat	cytosol	68.42	66.24
HORVU4Hr1G060760.1	Barley	cytosol	64.47	65.33
Zm00001d047841_P001	Maize	cytosol	69.08	64.42
Bra031725.1-P	Field mustard	cytosol	66.45	63.52
Bra018384.1-P	Field mustard	cytosol	66.45	63.52
Bra028141.1-P	Field mustard	cytosol	40.13	43.88
Bra027999.1-P	Field mustard	extracellular	45.39	40.12
Bra000703.1-P	Field mustard	extracellular	47.37	36.55

Protein Annotations

EnsemblPlants:Bra020295.1	EnsemblPlants:Bra020295.1-P	EnsemblPlantsGene:Bra020295	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20
InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF241	PFAM:PF00011
PFscan:PS01031	SEG:seg	SUPFAM:SSF49764	UniParc:UPI0002543605	UniProt:M4DUV2	MapMan:19.1.8.1

Description

AT5G59720 (E=2e-059) HSP18.2 | HSP18.2 (heat shock protein 18.2)

Coordinates

chrA02:-:6079720..6080178

Molecular Weight (calculated)

17191.4 Da

IEP (calculated)

6.563

GRAVY (calculated)

-0.745

Length

152 amino acids

Sequence
(BLAST)

001: MSLVPSLFGG RRSNAFDPFS LDAWDPFEGL LTPSSARDMA AFTNARVDWK ETPEAHVFKA DLPGLKKEEV KVEVEDKNIL QISGERSKEN EEKNDKWHRV
101: ERSSGKFMRR FKLPENAKME EVKATMENGV LTVTVPKAPE KKPEVKSIDI SG

Best Arabidopsis Sequence Match ( AT5G59720.1 )
(BLAST)

001: MSLIPSIFGG RRSNVFDPFS QDLWDPFEGF FTPSSALANA STARDVAAFT NARVDWKETP EAHVFKADLP GLKKEEVKVE VEDKNVLQIS GERSKENEEK
101: NDKWHRVERA SGKFMRRFRL PENAKMEEVK ATMENGVLTV VVPKAPEKKP QVKSIDISGA N

Arabidopsis Description

HSP18.118.1 kDa class I heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:P19037]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.