Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d028555_P001 | |
| Zm00001d028557_P001 | |
| Zm00001d028561_P001 | |
| Zm00001d047841_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER95120 | Sorghum | cytosol | 89.94 | 90.51 |
| TraesCS4D01G212500.1 | Wheat | cytosol | 83.65 | 85.81 |
| Zm00001d028557_P001 | Maize | mitochondrion | 84.91 | 85.44 |
| Zm00001d028555_P001 | Maize | extracellular, plasma membrane | 84.91 | 85.44 |
| HORVU4Hr1G060760.1 | Barley | cytosol | 80.5 | 85.33 |
| TraesCS4A01G092600.1 | Wheat | cytosol | 82.39 | 84.52 |
| TraesCS4A01G092700.1 | Wheat | cytosol | 81.76 | 83.87 |
| Zm00001d047841_P001 | Maize | cytosol | 83.02 | 80.98 |
| Zm00001d039936_P001 | Maize | cytosol | 67.92 | 71.05 |
| Bra020295.1-P | Field mustard | cytosol | 66.67 | 69.74 |
| CDY60563 | Canola | cytosol | 66.67 | 69.74 |
| Zm00001d008577_P001 | Maize | cytosol | 67.92 | 69.68 |
| AT1G53540.1 | Thale cress | cytosol | 67.92 | 68.79 |
| Bra006697.1-P | Field mustard | cytosol | 65.41 | 68.42 |
| Zm00001d039933_P001 | Maize | plasma membrane | 66.04 | 68.18 |
| AT3G46230.1 | Thale cress | cytosol | 66.67 | 67.95 |
| CDY56096 | Canola | cytosol | 64.78 | 67.76 |
| AT5G59720.1 | Thale cress | cytosol | 68.55 | 67.7 |
| CDY49575 | Canola | plastid | 67.92 | 67.5 |
| Bra002539.1-P | Field mustard | plastid | 67.92 | 67.5 |
| CDX99119 | Canola | cytosol | 66.04 | 66.88 |
| CDX86069 | Canola | cytosol | 66.04 | 66.88 |
| Bra018216.1-P | Field mustard | cytosol | 66.04 | 66.88 |
| CDX88719 | Canola | cytosol | 66.67 | 66.25 |
| CDX71079 | Canola | cytosol | 66.04 | 65.62 |
| Zm00001d039942_P001 | Maize | cytosol | 50.94 | 54.36 |
| Zm00001d039941_P001 | Maize | cytosol | 40.25 | 38.55 |
| Zm00001d007271_P001 | Maize | cytosol, endoplasmic reticulum | 45.28 | 38.5 |
| Zm00001d044728_P001 | Maize | mitochondrion | 34.59 | 37.67 |
| Zm00001d053965_P001 | Maize | mitochondrion, plastid | 42.14 | 36.41 |
| Zm00001d003554_P001 | Maize | endoplasmic reticulum, golgi | 44.03 | 33.65 |
| Zm00001d025508_P001 | Maize | extracellular | 43.4 | 31.8 |
Protein Annotations
| EntrezGene:100191552 | MapMan:19.1.8.1 | Gene3D:2.60.40.790 | InterPro:A-crystallin/Hsp20_dom | UniProt:B4F976 | EMBL:BT033664 |
| EMBL:EU961108 | InterPro:HSP20 | InterPro:HSP20-like_chaperone | InterPro:IPR002068 | InterPro:IPR008978 | ProteinID:ONL96399.1 |
| PFAM:PF00011 | PFscan:PS01031 | PANTHER:PTHR11527 | PANTHER:PTHR11527:SF240 | SUPFAM:SSF49764 | UniParc:UPI00017B62B4 |
| EnsemblPlantsGene:Zm00001d028561 | EnsemblPlants:Zm00001d028561_P001 | EnsemblPlants:Zm00001d028561_T001 | SEG:seg | : | : |
Description
17.4 kDa class I heat shock protein
Coordinates
chr1:+:39214417..39214896
Molecular Weight (calculated)
17881.1 Da
IEP (calculated)
7.796
GRAVY (calculated)
-0.673
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLIRRGNAF DPFSLDLWDP FEGFFPFGSG GVRSLVPSLP RTSSETAAFA GARIDWKETP EAHVFKADVP GLRKEEVKVE VEDGNVLQIS GERNKEHEEK
101: NDRWHRVERS SGKFLRRFRL PDNAKADQIK ASMENGVLTV TVPKEEAKKA DVKNVQITG
101: NDRWHRVERS SGKFLRRFRL PDNAKADQIK ASMENGVLTV TVPKEEAKKA DVKNVQITG
001: MSLIPSIFGG RRTNVFDPFS LDVFDPFEGF LTPSGLANAP AMDVAAFTNA KVDWRETPEA HVFKADLPGL RKEEVKVEVE DGNILQISGE RSNENEEKND
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG
Arabidopsis Description
HSP17.6C17.6 kDa class I heat shock protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P13853]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.