Factsheet for Zm00001d039941_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
MultiLoc:	extracellular
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02533	Sorghum	cytosol	81.93	82.42
Os01t0135900-02	Rice	plasma membrane	68.07	68.07
HORVU3Hr1G006930.1	Barley	cytosol	65.06	65.45
TraesCS3B01G048800.1	Wheat	cytosol	63.86	64.24
TraesCS3B01G048700.1	Wheat	cytosol	62.05	62.8
TraesCS3A01G035400.1	Wheat	cytosol	61.45	61.82
TraesCS3A01G035500.1	Wheat	mitochondrion, plastid	62.05	49.52
Zm00001d008577_P001	Maize	cytosol	42.77	45.81
Zm00001d039936_P001	Maize	cytosol	40.96	44.74
Zm00001d039933_P001	Maize	plasma membrane	40.36	43.51
Zm00001d028557_P001	Maize	mitochondrion	39.16	41.14
Zm00001d028555_P001	Maize	extracellular, plasma membrane	39.16	41.14
Zm00001d028561_P001	Maize	cytosol	38.55	40.25
GSMUA_Achr9P03540_001	Banana	cytosol	38.55	40.0
VIT_13s0019g03170.t01	Wine grape	cytosol	37.95	39.62
HORVU3Hr1G006940.2	Barley	cytosol	57.83	39.51
GSMUA_Achr6P33860_001	Banana	cytosol	39.16	39.39
Zm00001d047841_P001	Maize	cytosol	36.75	37.42
Zm00001d039942_P001	Maize	cytosol	31.33	34.9
GSMUA_Achr7P14910_001	Banana	cytosol	34.94	34.52
GSMUA_Achr8P00290_001	Banana	cytosol	27.71	31.72
KRH49235	Soybean	cytosol	28.92	30.77
KRH00090	Soybean	cytosol	31.33	30.41
Zm00001d044728_P001	Maize	mitochondrion	24.7	28.08
Zm00001d007271_P001	Maize	cytosol, endoplasmic reticulum	30.12	26.74
PGSC0003DMT400049226	Potato	cytosol	30.12	25.64
KRH62434	Soybean	cytosol	22.89	24.2
Zm00001d003554_P001	Maize	endoplasmic reticulum, golgi	29.52	23.56
Zm00001d053965_P001	Maize	mitochondrion, plastid	25.9	23.37
PGSC0003DMT400030603	Potato	cytosol	25.9	22.28
Zm00001d025508_P001	Maize	extracellular	28.92	22.12
Solyc09g011710.2.1	Tomato	cytosol	27.11	21.63
PGSC0003DMT400049225	Potato	mitochondrion	30.12	21.37
Solyc10g086680.1.1	Tomato	mitochondrion	29.52	20.94

Protein Annotations

EMBL:EU972970	EnsemblPlants:Zm00001d039941_P001	EnsemblPlants:Zm00001d039941_T001	EnsemblPlantsGene:Zm00001d039941	EntrezGene:100285576	Gene3D:2.60.40.790
InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527
PANTHER:PTHR11527:SF141	PFAM:PF00011	PFscan:PS01031	ProteinID:ONM30202.1	SEG:seg	SUPFAM:SSF49764
UniParc:UPI000182FAF6	UniProt:B6U6V5	MapMan:35.1	:	:	:

Description

16.9 kDa class I heat shock protein 2

Coordinates

chr3:-:20014552..20015052

Molecular Weight (calculated)

17399.6 Da

IEP (calculated)

4.806

GRAVY (calculated)

0.167

Length

166 amino acids

Sequence
(BLAST)

001: MSLVRLLDTL ALDSWVRNPF TIFGTAVAAD AWLASDTSAF ANTHIESRDT AAAYVFSAAL PPGVKKEEVT VELDEGNVLV IAGERSVCRQ ERSDGCHHIE
101: RSRATFLARF HLPEDAAVDG VRAALDAGRL TVTVPKVGAA AAAIVPEKPA ADAPALAPVP VEAGPC

Best Arabidopsis Sequence Match ( AT1G53540.1 )
(BLAST)

001: MSLIPSIFGG RRTNVFDPFS LDVFDPFEGF LTPSGLANAP AMDVAAFTNA KVDWRETPEA HVFKADLPGL RKEEVKVEVE DGNILQISGE RSNENEEKND
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG

Arabidopsis Description

HSP17.6C17.6 kDa class I heat shock protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P13853]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.